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GREIN is a fantastic tool for exploring RNA-seq data, and I greatly appreciate it. However, there appears to be an issue where certain datasets include only 20 samples each, which is not consistent wi…
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Hello, if I try to run this in parallel on a cluster with slurm I get a *** caught bus error ***, even if I give enough memory.
I tried with just one core but i get the following error:
```
…
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Could you please provide more details on generating TCGA datasets?
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Since the topic of liquid biopsies is hot right now, and the use of shallow WGS is actually good enough to identify CNVs with approximately 1Mbp resolution, I think it would be nice to incorporate som…
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Can you tell me the environment such as edition of tensorflow?
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`):
1.2.3
- OS name and version (`lsb_release -ds`):
CentOS release 6.9 (Final)
**To Reproduce**
```
bcbio_nextgen.py -n 16 sample…
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This request was created from a contribution made by Francesco Mazzarotto on March 23, 2022 14:16 UTC.
Link: [https://gatk.broadinstitute.org/hc/en-us/community/posts/4892502642075-FilterMutectCalls-…
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https://pubmed.ncbi.nlm.nih.gov/28622513/
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before cura…
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https://doi.org/10.1126/science.abl9283
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curati…
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https://www.nature.com/articles/s41591-020-0915-3
Not sure if data is available...
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study …
jjgao updated
2 years ago