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Hi there,
I have a folder containing numpy files of brats which are all (128,128,128,4) and I have written in the path to this folder in cpc_3d_brats.json config file. However, when I tried to run …
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Excuse me,'ten models were trained via 10-fold cross-validation on the training set' In the paper.But I only see the last ten models saved and a baseline, not the ten cross-validation runs in the code…
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Hello, I don't understand very well how your dataset is placed. Can you describe in detail?I can see aligned dataset, unaligned dataset, and single dataset here. But in aligned datset, are the data o…
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Hello, I just come across this repo and wanted to try some pre-training on a Brats dataset.
For pre-training, where do I specify the path to where I want the pre-trained model/weights to be saved i…
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Please, anyone can tell me how to get the score of prediction? like accuracy of classification. Thank you
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Hello Professor Isensee,
I'm trying to use your nnU-Net model to run on fewer modalities than the four provided in the BraTS dataset and then seeing how these trained models do on hospital data fro…
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Hi Fabian et al,
As you had mentioned in the Brats 2020 paper, you have trained models using sigmoid activation, and tumor regions independently such as tumor core(TC), ET, and whole tumor(WT).
M…
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Hello, I want to ask why -1 is added to the volume after cropping where seg = 0 and nonzero_mask=0?
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Hi,
Thanks for your fantastic work. One question is why we preprocess the BRaST2019 into a binary problem. According to your paper (https://arxiv.org/pdf/2105.09511v3.pdf), the dataset has four cla…
ghost updated
2 years ago