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I have a TSV file training_abstracts.tsv when I use the function:
‘def test1():
with open('F:\\small paper\\ner\\data_file\\training_abstracts.tsv', 'r', encoding='utf-8') as f1:
line =…
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Hello,
I just came up with a new question related to the previous problem I had.
Now I am running cMonkey on a Ecoli data table. We have the exactly same name in my String file and data table but …
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When calculating motif role statistics, we should just estimate the total number of motifs first and then enumerate the roles. As things stand now, we run the risk of doing two slow things instead of …
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I'm trying to build a Convolutional Bi-directional LSTM to classify DNA sequences ala this paper: [DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA se…
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Hi, if I try the motif density plugin as described in the *README* it does not show the track. After some investigation I found out that there is a typo in the *README* for the `type`.
I changed th…
nauer updated
7 years ago
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Original ticket https://networkx.lanl.gov/trac/ticket/190
Reported 2008-11-24 by @hagberg, assigned to @hagberg.
Triadic Cencus (triads) is a way for looking for motifs in a directed graph.
Commonly …
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This is VERY important!!
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I think as a group we should discuss the current thresholding. Everyone needs to look at the website, and then we can look at some of the counts/plots @isabelleberger will be making to decide how we w…
jfear updated
7 years ago
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Paper needs to be read carefully for relevance.
https://dx.doi.org/10.1093/bioinformatics/btv315
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@Haddox: Could you make a structure or structures that show the sites of diversifying and purifying selection? We would want these to go in Figure 6. I have left some notes in Figure 6 about what migh…