baliga-lab cmonkey2 issues

baliga-lab / cmonkey2

Python port of cMonkey, a machine-learning based method for clustering

GNU Lesser General Public License v3.0

26 stars 16 forks source link

issues

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conda install?

#81 ruthangelina opened 4 months ago
0
local rsat files can't be read correctly

#80 hughit32 closed 7 months ago
2
Wondering if Cmonkey2 works well with scRNAseq dataset

#79 Rohit-Satyam opened 9 months ago
1
error when using example data

#78 tangbozeng opened 2 years ago
0
Error

#77 vpandey-om opened 3 years ago
7
Operational Error

#76 as1403 opened 5 years ago
3
KeyError running human data

#75 LuziaThea closed 6 years ago
1
python 3 cmonkey crashing early

#74 fwschmitz closed 6 years ago
5
error when using example data

#73 wwick closed 7 years ago
5
fixed bug that caused incorrect number of nodes to be reported

#72 izzi-13 closed 7 years ago
0
Minor bug in stringdb.py

#71 izzi-13 closed 7 years ago
2
Options for running cMonkey2 with an organism that is not included in the KEGG database

#70 vvelasqz closed 7 years ago
1
cmonkey crashes with yeast

#69 kieran-mace closed 6 years ago
2
Invalid literal error running human data

#68 maxneal opened 7 years ago
0
cm2view: cluster list initially always shows iteration 1

#67 weiju closed 6 years ago
1
HTTP error

#66 prashantkum7 closed 7 years ago
8
To know the scores

#65 ABanaeiEsfahani opened 7 years ago
2
add gene annotations: RSAT gene

#64 weiju opened 7 years ago
0
A question regarding RSAT

#63 ABanaeiEsfahani closed 6 years ago
17
urllib2.HTTPError: HTTP Error 404: Not Found

#62 ABanaeiEsfahani closed 7 years ago
3
0 edges in network 'operon' error for Halobacterium test run

#61 maxneal closed 7 years ago
5
checkratios flag fails

#60 adelomana closed 4 years ago
0
installation crashes in osiris

#59 adelomana closed 8 years ago
1
MEME parallel environment fail

#58 adelomana closed 8 years ago
4
problem with STRING file

#57 adelomana closed 8 years ago
5
Python 2.7.x/pip Installation issue (was: I can't load.)

#56 jacobvalenzuela closed 7 years ago
5
executable paths

#55 adelomana closed 8 years ago
2
MAST error in attempted human run

#54 cfbuenabadn closed 7 years ago
3
--use_BSCM is not working on my datset

#53 ABanaeiEsfahani closed 8 years ago
5
Fixed some incompatibilities with Python 3

#52 uweschmitt closed 8 years ago
1
cmonkey2 does not work with meme 4.11

#51 NelleV closed 7 years ago
2
Python 3

#50 mruffalo closed 8 years ago
3
Problem with Aspergillus

#49 IvanV87 closed 6 years ago
2
cMonkey -> Machine Learning

#48 sdanzige closed 9 years ago
0
Errors in attempted mouse and human runs

#47 vectorborne5 closed 6 years ago
6
Fixes RSAT query so test_all passes

#46 sdanzige closed 9 years ago
0
Fixed a bug in read_edges2 that showed up in linux environment but not o...

#45 sdanzige closed 9 years ago
0
Resplit based on BSCM in post-processing and fix network load

#44 sdanzige closed 9 years ago
1
Cannot display clusters where all genes are included

#43 sdanzige closed 6 years ago
0
Crashes if --num_iterations 2

#42 sdanzige closed 8 years ago
1
BSCM inclusion and alternative RSAT url and file names

#41 sdanzige closed 9 years ago
4
Split out example_data and testdata from code repo

#40 dreiss-isb closed 7 years ago
1
Add BSCM option and reintroduce RSAT database configuration.

#39 sdanzige closed 9 years ago
0
motif_info_id in 'meme_motif_sites' == ROWID in motif_infos?

#38 scalefreegan closed 9 years ago
2
Can't map meme motifs to gene names in output sqlite db

#37 scalefreegan opened 9 years ago
0
store all iterations (or every 10) in iteration_stats?

#36 dreiss-isb closed 9 years ago
1
xmlrunner requirement?

#35 scalefreegan closed 9 years ago
1
Run human 'out of the box'.

#34 sdanzige closed 9 years ago
0
Add port selector for cmviewer

#33 JohnCEarls closed 9 years ago
0
Update README.md

#32 dreiss-isb closed 10 years ago
0