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What would you think of having citations within an idea exempt from the 200 word limit and referenced like this [1]. Then you could have a list of references as individual boxes to fill in either with…
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Hi, when I use " Entrez.efetch(db="pubmed", id=l, rettype="medline", retmode="text") "
to download pubmed citations, I found an error of the result.
Such as PMID is "23039619", the reslut of Me…
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The pathways for target/compound/publication API calls return error code 500 when the pathway_organism parameter is defined (e.g. with Homo sapiens). It works fine in the general "Pathways: List" call…
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I see these dependencies:
```
org.apache.clerezza
rdf.jena.sparql
0.6
compile
…
retog updated
10 years ago
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Will be interesting to see if XmlStreamer is faster and why.
prewk updated
10 years ago
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I created an [IPython Notebook for using Biopython Entrez](http://nbviewer.ipython.org/github/gumption/Using_Biopython_Entrez/blob/master/Biopython_Tutorial_and_Cookbook_Chapter_9.ipynb) to work thro…
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I am running the following code using version 1.62
from Bio import Entrez
Entrez.email = "tom.brown@enmu.edu"
handle = Entrez.esearch(db="pubmed", term="biopython")
record = Entrez.read(handle)
and …
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Please enable MathJax everywhere it makes sense!
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Fetching from Pubmed works great, but some DTD files seem to be missing. Here are the warnings I get:
```
/usr/lib/pymodules/python2.7/Bio/Entrez/Parser.py:501: UserWarning: Unable to load DTD file p…
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I am processing MEDLINE and full text from PubMed Central. I am using the classification program with the preprocessing offered by default by TEES but it turns out to run very slow. I am wondering i…