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Dear Brian,
It may not be crucial issue, but would be very useful if it gets solved.. I loaded SQlite with blastx, blastp, pfam, tmhmm, signalp outputs, and made the .xls report. However, the repo…
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Conda installation might have a broken package for `perl-db-file`, issue on bioconda is here: https://github.com/bioconda/bioconda-recipes/issues/24688. The problem is that `perl-db-file` was built a…
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Thanks for this great tool.
Currently, I am using PASA to update the results output by EVM (which integrates braker2 gff/genomethreader_gff/stringtie_transdecoder_gff) as indicated in the wiki.
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include an option to do this
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**Are you using the latest release?**
funannotate v1.8.13
**Describe the bug**
I have set "-other_gff compreh_init_build.gff3:10" It was recognised by funannotate, was set source to other_pred1. …
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@KatharinaHoff,
Hi,
I'am using augustus etraining training a very large genome, approxiate ~10Gb. my training set is select from transdecoder result. my gene model is very long. longer than …
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Greetings,
I am currently using SQUANTI 3.0-5.0 to run quality control, but I have received some error messages:
```
`Reading genome fasta /home/slin023/Pregina.p_ctg.removedBac.fa.…
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I am trying to run EUKulele on an HPC using a batch script. The compute nodes don't have internet connectivity, so I downloaded the PhyloDB database to the following location: /work/nvp29/databases/ph…
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Dear developer,
After I read the cookbook I have some simple questions.
Q1:
About the Trinity file in the example 1. I have Trinity de novo assembly and Trinity genome-guided assembly, which on…
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First of all, thank you for creating this powerful tool to create/improve the annotation of the species we have data for,
Having said that I would like to report a specific problem that I am facin…