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_This was spotted first by @aviczhl2 in the groups (edited)_
Proposal edited by mod on September 14
KP.1.1.1 > S:F59S (T21738C) > S:T22N (C21627A)
Query: T21738C,C21627A,C20104T,-C6701T
Samples:…
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Dear Developers,
I have my vcf file generated using UCSC HG38. I realized that is a zero-based coordinate system.
I annotated the vcf with VEP and I also got to know that Ensemble uses a [one-based …
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Hello, I am in the process of downloading the dataset used in the paper, but I am unable to download the train.json file for the Visual Genome dataset because the URL "https://datarelease.blob.core.wi…
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Hello,
We've isolated some subsp salamaes for one of our projects. I have a few questions about the SISTR output for these isolates:
sample | cgmlst_found_loci…
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What should the genome standard be?
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# Issue Report
## Please describe the issue:
Dear Oxford Nanopore team, thank you very much for providing awesome tool and technology.
I'm running dorado v. 0.8.3+98456f7 on a Direct RNA sequ…
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### Description of feature
Hi,
A few thoughts after working with CREsted:
1. Would you consider a `genome` style class like snapatac2 for handling the reference files (fasta, chrom sizes, gtf, …
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Hello
Thank you very much for your great work! I run scAllele and got a vcf output. My cells are geneA exon5 knock out cells by CRISPR. But scAllele did not find any deletion in exon5 of geneA.
…
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### Before opening an issue, please:
- [x] Make sure you are using the latest version using `datasets --version`
- [x] Review our [documentation](https://www.ncbi.nlm.nih.gov/datasets/docs/downloa…