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**Is your feature request related to a problem? Please describe.**
Build a notebook that implements the analysis we did in https://arxiv.org/abs/2112.15210
**Describe the solution you'd like*…
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Hi,
I am trying to do Cell-type enrichment and now on step 33 and 34 from cp_manuscript_code.Rmd.
However, upon running the function on my laptop, I encounter some error as functions are not f…
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Hey guys,
I was wondering if it'd be possible to perform a multivariate regression of gene expression in cell type A against proximity to other cell types (B-D say), so we can say what genes are di…
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Hi, thanks a lot for developing awesome tool!
Just wanted to note that I found a possible error in the code with conversion from Seurat to Giotto:
https://github.com/RubD/Giotto/blob/suite/R/intero…
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Thank you very much for the example, the command line version of the software works very well. But there's a problem that bothers me. When several samples are analyzed in the same batch, the graphical…
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The new display of the entries recalled in the "Explore visually similar images" section, not as simple comparisons between images but as merged entries, brings out some problems:
**Raphael's Madon…
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Hi,
I'm so sorry for asking many question, but I encounter this error when I am trying to run step 45 and 50 on cp_manuscript_code.Rmd with the 2020_ST_STCC data.
Below is the details:
the …
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One way to make CI faster could be cache installation or compilation objects with ccache in CI.
Cf https://docs.microsoft.com/en-us/azure/devops/pipelines/caching/?view=azure-devops for more detail…
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According to PEP8:
_To better support introspection, modules should explicitly declare the names in their public API using the __all__ attribute. Setting __all__ to an empty list indicates that the…
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Hello,
I realized that TakensEmbedding memory needs with more than 10k rows is quite huge (up to 96GB of RAM in my case) if `n_jobs=-1` and one have lots of cores (10 cores in my case).
Is there…