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1. **Is it possible to get the real names of the sequences in mOTU.v1.padded reference sequence file?**
For example, I want full names of the fasta headers-
>1048834.TC41_3292 101 1561
>158499257-s…
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I'm new to MICOM and COBRA, and I'd like to use MICOM to predict the metabolites similar to MAMBO and the Garza et al. 2018 paper's approach which, as I understand it, is to maximize the correlation o…
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Example: https://kilter.talkfunnel.com/2017/9-microbiome-gut-function-and-immunity
The handle used here is nutritionist and is misleading. Keywords like engineer, doctor, developer should not be al…
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Here are some possible benchmarking scenarios for the Unipept API
- analyse metaproteomics data sets (use sample data sets available from the Unipept website)
- analyse shotgun metagenomics data sets …
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It was pointed out to me at the WB SAB that some predatory journals are indexed BY PubMed.
I propose that we make a list of any predatory journals, or journals with a questionable review or abse…
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I am new to the field of gut microbiome data analysis. I did 16S rRNA seq (V4 region) for DNA extracted from human stool samples. I saw that there were close to 24 000 reads present in my negative con…
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Hi Developer,
My protein DB is "760MetaHit_139HMP_368PKU_511Bac.uniq.pep_accession_concatenated_target_decoy.fasta" containing 18 M proteins from human gut microbiome data.
I can not get through…
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Hello,
I am currently running through fish gut microbiome data in Phyloseq and I have just noticed an error in one data point found in my sample data. One of my populations has been misnamed and re…
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*Related to the release:* The datasets we describe in the manuscript (HMP and mouse gut) need to be available on https://data.cami-challenge.org/participate and properly described. This is mainly work…
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same as #2
2 pooled samples in [PRJNA295144](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA295144)