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Dear pzmzml-integrator-Team,
i have just found your repo here and i am very excited about the mzid parser, since i am looking for a lightweight python mzid parser.
I have a very simple script u…
JB-MS updated
7 years ago
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Hello,
as investigated in https://github.com/lgatto/msidmatching/issues/2#issuecomment-38047074 the `acquistionnum`/`scan number` reported by `mzR` for mzML/mzXML files contains the same numbers as t…
sgibb updated
7 years ago
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Hi,
Is it possible to import the x! tandem xml file from the Searchgui output folder into Skyline to produce a spectral library? I tried renaming it to .xtan.xml, as required by Skyline, but with no …
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great to see that you are supporting mzIdentML!
Is it possible that modifications are missing in the mzIdentML file?
We run tide-search with C=57.0214637206 (carbamidomethylation), yet we could not …
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Hey folks,
having some issues with MSGF+, mainly its rather low ID rate compared to the others (X!Ta, Ms Amanda, Comet). So in my test data sets from today around 10% instead of 20% in the others. th…
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We use Bruker ProteinScape to run Mascot searches and manage our MS/MS data. The latest version of ProteinScape has the ability to import mzIdentML files and merge external search results with its own…
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I was trying to use ProteoWizard idconvert to convert the Morpheus mzid output to pep.xml for pyQuant.
idconvert expects an EnzymeName tag with a cvParam.
The Morpheus maid has:
% idconvert…
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Hello,
I continue my self training using PIA in Knime.
Thanks you help that helped me a lot.
Now, I have a simple workflow from mzid files, to PIA compiler and PIA analysis.
I would like to export …
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@julianu here how we decided to export metadata from mzidentml -> mztab:
- https://github.com/PRIDE-Utilities/ms-data-core-api/blob/master/src/main/java/uk/ac/ebi/pride/utilities/data/exporters/MzIden…
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