-
# nf-core/pangenome feature request
Hi there!
## Describe the solution you'd like
I want to be able to start the pipeline with a folder of FASTAs as an input. All current steps should be run …
-
Hi, just a quick question.
After running the pangenome pipeline, I found that several reference contigs were lost and not represented in the result files although I used "keep_contigs" as in the tu…
-
Dear authors:
Congratulations on publishing an excellent pan genomic work! We are currently using MC to construct the pan genome, but we are not very clear on how to use the pan genome to obtain non …
-
Hello, I'm trying to test euka out on some metagenomic shotgun sequencing samples. I set up according to instructions on my CentOS 8 remote server. The installed location of vgan is `/usr/bin/vgan`
T…
-
**描述错误**
CSL 样式:403huazhong-agricultural-university.csl
有些条目在有的文档中inline citation会把名字的首字母显示出来。但是新建一个新文档inline citation又是正常的。如下:
**异常情况**
**正常情况**
**条目信息**
```json
[
{
…
-
I want to follow Minigraph-Cactus paper, Supplementary Figure 15.
However, i couldn't find any details to count up the non-reference nodes in Minigraph-Cactus pangenome.
Did you use vg format to…
-
Hello Daniel,
I found that the version of the `panacus` is no longer compatible with the results of Mingraph-Cactus (MC), and the final visualized graph is incorrect. I think this problem needs to …
-
Dear developer:
We are conducting the collection test of our real data according to the example data, but we have encountered some problems and hope to get your help. The errors are as follows.
Best…
-
**1. What were you trying to do?**
I am trying to autoindex a pangenome of 7 _S. cerevisiae_ isolates built using `cactus-pangenome`.
The following steps were to run `vg mpmap` followed by `rpvg` o…
-
Hi !
I used [PGGB](https://github.com/pangenome/pggb) software to get a graph of one chromosome of 10 genomes, and then wanted to align the WGS data to the graph and perform SV calling.
Command:
…