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PR should *only* be used in col2 in the GAF
```
curl -L -s "http://current.geneontology.org/annotations/mgi.gaf.gz" | gzip -dc | grep ^PR | wc
2139 51464 494819
```
Examples:
```
P…
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This UniProt Keyword is sometimes applied to gene products which are involved in carbohydrate derivative metabolism, rather than carbohydrate metabolism.
yea4 O74750 NST UDP-N-acetylglucosamine t…
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Pombase
https://www.pombase.org/term/GO:0141164 0
Move these down?
https://www.pombase.org/results/from/id/3241f766-e918-482a-bebe-3e9752adfa45
I will ask SGD to make these more specific
SGD…
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#### Current behavior:
22 genes are discovered to be uncorrelated with their corresponding reactions in `Leukotriene metabolism`.
| Gene| UniProtID| Reaction| GPR| Correlation| Manually …
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Look at any junction, i.e.
15 42698142 42700410 CAPN3 ENST00000569136.1 protein_coding
15:42698142 is the first base of the intron
15:42700410 is the second base of the exon
How does it influenc…
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Hi @vdemichev,
Hi my log shows the following:
[0:00] Loading spectral library phl004_canonical_sall_osw.csv
WARNING: no neutral loss information found in the library - assuming fragments withou…
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- [ ] obsolete
GO:1990735 gamma-tubulin complex localization to mitotic spindle pole body
only used once (by PomBase)
Is used to describe the activity of anchoring the gamma tubulin complex to th…
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The cdc8 annotation to GO:0098772 is being flagged by the GO checks because the term is marked do-not-annotate:
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to unin…
mah11 updated
2 years ago
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Dear Brian
I have a problem about mapping and aligning transcripts to the genome using PASA. Can the transcript here be a non-coding transcript? My purpose is to verify the GT-AG rule for non-coding …
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* **InterPro ID / label**
[IPR012259](http://www.ebi.ac.uk/interpro/entry/IPR012259)
* **Example sequences with problematic annotation (ID + gene/protein name):**
https://www.pombase.org/gene…