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Homebrew allows to deploy and install binaries easily.
It can be used on Linux.
Homebrew can be added to goreleaser.
I suggested it to do it for Atac
It was done pretty easily
https://github.com/…
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Hello,
I'm interested in using scglue to integrate my scRNAseq with scATACseq data, comprising four paired samples. These datasets are not multiome; they're only paired samples.
After processing…
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Same issue for me too
```
> SaveH5Seurat(object = pbmc, filename = 'pbmc_tmp.h5seurat', overwrite = T)
Warning: Overwriting previous file pbmc_tmp.h5seurat
Creating h5Seurat file f…
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Hello there,
Thanks for adding the `--summary` feature mentioned in #107, which really helps the troubleshooting. I'm currently trying to understand what they mean, because the numbers do not add u…
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Hi,
Thanks for this pipeline.
I was trying to use it on atac-seq data. I got the following error message:
`Caused by: Process bamCoverage (1) terminated with an error exit status (127) Comma…
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https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/atac-seq/tutorial.html
This is the single bad option. If fixed-up, tutorial's entire wf runs great at ORG :)
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I'd like to plot bw files from my ATAC-Seq samples with the same y-axis scale for all samples alongside sashimi plots for my RNA-Seq samples with variable y-axis scales. Would that be possible, or has…
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Hi!
I am trying to run maxATAC on `scATAC` data from 10X system. I am running `maxatac preapre` and pointing the function to my fragments file that ends with `.tsv.gz` and it fails with (I think) a…
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Dear CAPITAL developers,
I am reaching again regarding the issue of plotting any sort of gene expression trends in custom dataset. When I run the tutorial and example data, everything works (except…