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Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_NoPolyATail
Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_NoPolyATail_Qiagen
Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_PolyATail
Icterohaemorrha…
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## New feature
Pinging @rsuchecki @pditommaso (I couldn't find an issue with this, I hope it's okay that I open a new one).
Based on a small conversation on the Gitter ([1 - primary](https://gi…
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Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
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Hi everyone
I have been working with the National Institute for Communicable Diseases (NICD) on some of their SARS-CoV-2 sequencing. I adapted the "variation" workflow to call variants in Illumina …
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Long TODO lists don't get done.
We are trying to keep an issue open if a real effort is happening to resolve it.
The below priority list gives a sense of where bcbio is heading in the next two rele…
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### Description of feature
I know there is a [standard practice](https://nf-co.re/docs/contributing/design_guidelines) for making the schematics for the different nf-core pipelines. I just wanted to …
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I have a multi-sample vcf and I'd like to plot a subset of these as individual samples using MultiQC (similar to your WGS example report). I've run GATK VariantEval (with `-ST Sample -noEV -EV TiTvVar…
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Distribution of estimated insert sizes of mapped reads looks wrong on multiqc but ok in Qualimap Report: BAM QC (Insert Size Histogram). After normalization by mutiqc (fraction of reads) there is thi…
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## Bug report
A process that exceeds its memory limit is not terminated, even when it causes a memory overflow:
```
process {
memory = '3GB'
}
```
![Screenshot 2024-10-15 at 16-11-06 shrive…
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## Bug report
I observed unusual behavior in Nextflow with Docker enabled, despite the .command.sh file appearing correct:
```
#!/bin/bash -eo pipefail
bcl2fastq --runfolder-dir bclFolder --p…