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In GitLab by @magr0763 on Oct 26, 2018, 13:20
In reading the main_segment.cpp code, there should be a relatively easy means by which to fix the "combined" bedgraph segment option such that it automat…
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**chr2L 6026 6046 1
chr2L 6040 6067 1**
chr2L 6883 6902 1
chr2L 6987 7008 2
chr2L 8328 8346 1
**chr2L 8346 8349 2
chr2L 8349 8378 1**
Overlapping regions in bedgraph file is creating errors w…
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Hi, this is my code to visualize a bed graph:
```py
import gosling as gos
data= gos.csv(
url='/violacimatti/Desktop/gosling/finale10.bedgraph',
headerNames=['chrom','start','end','valu…
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Is there a way to plot loops as arcs if my computed loops is in bedgraph format? I noticed that .bed.beddb files can be plotted as 1-d arcs.
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C:\Users\北寻\pyBigWig-0.3.17>python setup.py install
C:\Users\北寻\pyBigWig-0.3.17\setup.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecat…
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Hi
I'm trying to run your code, however I run into an error in step 2 of your tutorial:
`Exception in thread "main" org.apache.commons.math3.exception.NotStrictlyPositiveException: 0 is smaller …
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Hello! My question is about the difference of webpage use of SEACR and bash SEACR in terminal. They gave out different output files. My setting is "non" and "stringent". From webpage, I got only one .…
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Dear Raymond,
Thank you for your previous help on "input methylRaw object #46": methyldacker works very good and fast for us!
I'm sorry but we need again your help!
We have done the analysis for DM…
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In order to help troubleshoot our installation which is not working it would be helpful if you could post a bedGraph file, a training file and the corresponding successful output files for FStitch tra…
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https://github.com/taoliu/MACS/wiki/Build-Signal-Track#Fix_the_bedGraph_and_convert_them_to_bigWig_files
Probably just use Rtracklayer instead of doing anything external