Dowell-Lab FStitch issues

Dowell-Lab / FStitch

Fast Stitch Reader (FStitch) -- fast-processing tool written in C for the annotation of regions of active transcription.

Other

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

updated version to 1.1.1 to reflect last commit changes

#19 magruca closed 5 years ago
0
More explicit error report messages in train/segment modules

#18 magruca closed 5 years ago
0
bidir code cleanup, added some error catching

#17 magruca closed 5 years ago
0
request validated data, training and output files

#16 sandymartin opened 5 years ago
3
fstitch bidir failing when segment file is empty

#15 magruca closed 5 years ago
1
add coverage calculation to bidir module

#14 magruca opened 5 years ago
0
fstitch bidir module failing on some versions of refseq files due to scaffolding chromosomes

#13 magruca closed 5 years ago
1
fstitch sometimes not printing data from certain chromosomes

#12 magruca opened 5 years ago
1
"report" option does not work

#11 magruca opened 5 years ago
0
split concatenated bedfile such that we only have to run one command of segment

#10 magruca opened 5 years ago
1
"It appears that the training file provided was not created for negative strand data"

#9 magruca opened 5 years ago
0
Ignacio FStitch error -- "provided vector X is empty"

#8 magruca opened 5 years ago
0
Documentation -- update, fix, remove

#7 magruca closed 5 years ago
4
-chip argument

#6 magruca opened 5 years ago
0
Mysterious eRNA module

#5 magruca closed 5 years ago
2
Large differences in LLR calculated values between bedGraph formatted files

#4 magruca opened 5 years ago
1
FStitch still choking on 0 coverage values in bedGraph in segment (but not train)

#3 magruca opened 5 years ago
1
Need to fix strand issue in "segment" module

#2 magruca closed 5 years ago
3
Need to fix strand option in train

#1 magruca opened 5 years ago
0