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I was trying to download the pytorch state dict for the powerful chipmunk-model https://bioimage.io/#/?id=10.5281%2Fzenodo.5847355 in order to run it on ilastik. clicking on the ilastik logo and then …
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My operating system is Windows 11. To install the DeepImageJ (v3.0.3) in Fiji, I have followed the steps outlined in the [Manual installation page](https://deepimagej.github.io/download.html) and have…
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https://github.com/bioimage-io/spec-bioimage-io/blob/gh-pages/model_spec_latest.md
Beware that this might not include microns resolution yet.
what we should probably do is be able to convert our…
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To make it a no-brainer:
1. Provide halo for models:
1. #220
2. #252
2. Provide patch size for samples:
1. #302
2. #307
3. Make model filters look different and like filters:
…
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# 3D UNet Mouse Embryo Live
BioImage.IO -- an AI model repository for deep learning.
[https://bioimage.io/?tags=pytorch&id=10.5281%2Fzenodo.6384845&type=model](https://bioimage.io/?tags=pytorch&id=1…
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Here are some notes that hopefully --- through some more discussion --- will turn into an overview of coming changes.
Special thanks to @oeway and @k-dominik for discussions so far.
# Shortcomings…
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"Request changes" for https://bioimageio-uploader.netlify.app/#/status/resourceful-ant results in an error:
(possibly related to #103, also blocks 'requesting changes' anyway)
```console
…
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https://github.com/qbicsoftware/etl-scripts/blob/5938535b1e6dd0e49fda2d93709f16725213858d/README.md?plain=1#L422
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Hi all,
I am considering making a community contribution to your project if you are interested. I maintain the [Bio-image Analysis Notebooks](https://haesleinhuepf.github.io/BioImageAnalysisNoteboo…
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There is a tool for loading images from the BIA into the Galaxy history: https://imaging.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/bia_download/bia_download/0.1.0+galaxy0
**T…