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Using ARIBA for gene detection, I tried to download the ncbi database with the following line
`ariba getref ncbi out.ncbi `
```
E-fetching 5795 genbank records from BioProject PRJNA313047 and w…
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## Describe the desired feature/enhancement
I'd like the ability to use many more restriction sites much like biopython's Restriction package.
### Is your feature request related to a problem?
…
rmcl updated
3 months ago
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Link:
https://biopython.org/DIST/docs/biosql/python_biosql_basic.html
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Strictly speaking, this is a bug in the tool that has generated the genbank file that I am using (GeneData Biologics). It writes out the date with a single digit day number, if it is less than 10, so …
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Hey! I ran into trouble with GenBank output. I tried to parse a file that contains these lines with BioPython:
```text
LOCUS scf_19 41458 bp DNA linear VRL 2022-09-2…
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Hi Adam,
Now that I've gotten `BACPHLIP` installed, it's great! Thank you for making this tool.
However, I had to struggle for a while to get it working. Based on your listed dependencies, I mad…
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Hi @yollct ,
I wanted to try spycone, but got some trouble during the installation process. I tried to install spycone in a virtual environment following the instruction in the repository:
```py…
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Pull 700+ changes from biopython, merge and check if it's all working.
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Dear carlos,
I've seen the question you proposed in the fr3d repository. Recently I tried and analysed the code on how to convert cif file to graph via fr3d. But I found the method you'v implemente…
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Hi,
I was wondering if Biopython can be used with GPU, i.e., if it can be CUDA-enabled to speed up certain operations.
Thanks,
Hector