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AnantharamanLab
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VIBRANT
Virus Identification By iteRative ANnoTation
GNU General Public License v3.0
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gff file is blank
#96
TJrogers86
opened
2 weeks ago
0
VIBRANT Error: HMMER3 is not installed or not in $PATH. Please install HMMER3.
#95
mwylerCH
opened
1 month ago
0
Create Dockerfile
#94
charlenelawdes
opened
2 months ago
0
Contig with no annotation result but still be identified as virus
#93
quliping
opened
2 months ago
0
VIBRANT not generating information in outfiles
#92
lroppolo
opened
2 months ago
1
HELP!!!
#91
Peng2555
opened
3 months ago
6
VIBRANT not working VIBRANT error: could not identify KEGG HMM files in database directory. Please run VIBRANT_setup.py
#90
Jlee795
opened
4 months ago
6
KEGG/Pfam Pressing Error
#89
joshuakirsch
closed
5 months ago
2
No phages detected in bacterial genome sequence
#88
adijatj
opened
5 months ago
1
ModuleNotFoundError: No module named 'sklearn'
#87
lynnetea
opened
6 months ago
1
VIBRANT error: could not identify VIBRANT_categories.tsv in files directory.
#86
AndAvia
opened
7 months ago
4
No phage found/error with input format with the example data
#85
LaurenceHdL
opened
7 months ago
1
Cannot download database files properly - Broken links?
#84
DNADoubleFelix
opened
10 months ago
1
ERROR ./VIBRANT_setup.py -test
#83
TaekgeunLee1
opened
11 months ago
4
Failed to open key file profile_names/VIBRANT_pfam-plasmid_profiles.txt
#82
IBEXCluster
opened
1 year ago
3
Scikit-learn version issue: suggestion
#81
ellasiera
opened
1 year ago
4
Error with install
#80
dnolin13
opened
1 year ago
4
VIBRANT_AMG_pathways_* Total AMGs column
#79
TJrogers86
closed
9 months ago
2
question about provirus
#78
liucong0429
opened
1 year ago
1
Issue with KEGG ftp link
#77
charlesfoster
opened
1 year ago
1
Vibrant not working
#76
priscillaisaac98
opened
1 year ago
1
One-liner conda setup [.yaml file]
#75
erfanshekarriz
opened
1 year ago
1
The MLP module is having problem working
#74
Jeffery-Ni
opened
1 year ago
2
The presence of file beginning with temp1_ and normalized_
#73
WoCer2019
closed
1 year ago
4
Problem with gbk format
#72
Leytoncito
closed
1 year ago
3
GenBank ValueError with BioPython
#71
MrTomRod
opened
1 year ago
4
Question on AMG
#70
chenyj8
closed
1 year ago
1
[Errno 2] No such file or directory: VIBRANT_AMG_individuals_all_sags.tsv
#69
TianyiChang
opened
1 year ago
3
Prodigal custom path
#68
YuvalMulla
opened
1 year ago
2
Info: Regarding symlinks
#67
susheelbhanu
closed
1 year ago
2
contig size problem
#66
Leytoncito
closed
1 year ago
2
Does lots of N in viral bins affect the outcome of VIBRANT?
#65
qingruoyu
closed
1 year ago
2
Input files for VirSorter and VIBRANT
#64
maocheng2020
opened
2 years ago
3
VIBRANT cannot setup in puthon 3.8?
#63
ZhengXiaoxuan11542
closed
7 months ago
6
How does VIBRANT define viral lifestyle?
#62
liaohu1231
opened
2 years ago
1
Files being placed outside of designated directory
#61
TJrogers86
opened
2 years ago
2
Viral Quality Clariffication
#60
TJrogers86
opened
2 years ago
3
NCLDVs shown separate ?
#59
sipesk
opened
2 years ago
1
lifestyle prediction
#58
ucassee
closed
2 years ago
2
How to get AMGs nucleotide sequence?
#57
fanlu-f
opened
2 years ago
1
UnsatisfiableError while installing VIBRANT (glibc==2.27=0)
#56
P-Leao
opened
2 years ago
2
Problems of database related codes
#55
444thLiao
opened
2 years ago
3
Not all files transferred during git clone, or bioconda install
#54
reesea22
opened
2 years ago
6
Error in Integrated_phage_coordinates
#53
JLammons14
closed
2 years ago
2
Problem about the virus location
#52
mujiezhang
opened
2 years ago
2
problem of AMG number
#51
mujiezhang
closed
2 years ago
2
KEGG database
#50
sabina-llr
closed
3 years ago
2
KeyError with "NODE_X_length_X" contig names
#49
alexmsalmeida
opened
3 years ago
5
No data in any of the *.phages_*.fna files
#48
yue-clare-lou
closed
3 years ago
11
AMGs annotation suitable for diverse viral genomes?
#47
ChenTianYi99
opened
3 years ago
1
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