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AnantharamanLab
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VIBRANT
Virus Identification By iteRative ANnoTation
GNU General Public License v3.0
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Issue in running multiple files at once using VIBRANT
#46
BikramDroid
opened
3 years ago
3
Skip recovery step and only annotate viruses
#45
palomo11
opened
3 years ago
2
Missing prophage output
#44
klangenf
closed
3 years ago
5
Installation issue with conda
#43
ghost
closed
3 years ago
5
How does VIBRANT define a prophage region?
#42
niamhlacy
opened
3 years ago
2
Archaeal viruses detection
#41
yue-clare-lou
opened
3 years ago
1
Complete results were obtained after running VIBRANT, but there was an error.
#40
ZongzhiWu
opened
3 years ago
1
setup with downloaded database file
#39
liupfskygre
closed
3 years ago
7
VIBRANT v1.2.1 draw a picture error
#38
liuguoqi
closed
3 years ago
2
Issue in running .fastq files
#37
BikramDroid
closed
3 years ago
8
About the use of Pfam HMM files
#36
bingxue-98
closed
3 years ago
1
VIBRANT error: could not identify KEGG HMM files in database directory. Please run VIBRANT_setup.py.
#35
BikramDroid
closed
3 years ago
9
Combined phage genbank file is invalid
#34
jdwinkler-lanzatech
closed
3 years ago
15
Allow user to specify base file name
#33
jdwinkler-lanzatech
opened
3 years ago
2
IndexError: list index out of range
#32
ZongzhiWu
closed
3 years ago
10
phage names listed but .txt file says no phages identified
#31
kforcone
opened
3 years ago
1
.gff file of provirus position in scaffolds
#30
dominikmerges
closed
3 years ago
2
Which VIBRANT file(s) to generate gene-to-genome file for vConTACT2?
#29
satkinson0115
opened
3 years ago
5
Recommended minimum length
#28
Puumanamana
closed
3 years ago
2
Is VIBRANT suitble for identification of RNA virus from transcriptome
#27
zhaoxvwahaha
opened
3 years ago
5
Does VIBRANT trim any non-prophage sequences?
#26
mshamash
closed
3 years ago
4
Reproducibility issues
#25
felipehcoutinho
closed
3 years ago
6
Why do you not use the 99 release of VOG database?
#24
kodragonP
closed
3 years ago
1
Prophage Identification
#23
elithess
closed
3 years ago
1
about AMGs
#22
jerceyli
closed
4 years ago
3
How does VIBRANT handle 'N' bases in assembled scaffolds?
#21
mshamash
closed
4 years ago
2
Error: no input sequences to analyze
#20
aelbehery
closed
4 years ago
4
wget --no-hsts
#19
aelbehery
closed
4 years ago
1
NameError: name 'pfam_name' is not defined
#18
snayfach
closed
3 years ago
9
Taxonomic identities of predicted phages?
#17
Anto007
opened
4 years ago
10
Lytic vs lysogenic
#16
snayfach
closed
4 years ago
11
Errors in strand switching
#15
SilasK
closed
4 years ago
1
Prophage coordinates
#14
snayfach
closed
4 years ago
2
option to specify destination for database
#13
snayfach
closed
4 years ago
1
Speed, reproducibility issues with hmmsearch
#12
brymerr921
closed
4 years ago
6
Can you give us some information about the VIBRANT_summary_results_<name>.tsv
#11
SilasK
closed
3 years ago
1
Command line arguments
#10
SilasK
closed
4 years ago
2
-output flag?
#9
rotoscan
closed
4 years ago
8
ImportError: No module named 'numpy.random._pickle'
#8
felipehcoutinho
closed
4 years ago
4
VIBRANT_AMG_individuals.tsv not found
#7
AlanWongHonLun
closed
4 years ago
29
Duplicates in VIBRANT_genome_quality TSV file
#6
mshamash
closed
4 years ago
4
Scikit-learn
#5
Thexiyang
closed
4 years ago
1
Runtime
#4
slambrechts
closed
3 years ago
2
Correct translation table?
#3
Starfishgames
closed
4 years ago
1
Update README.md
#2
upendrak
closed
4 years ago
0
Bioconda package for VIBRANT
#1
npavlovikj
closed
4 years ago
22
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