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I was runnning a test of the spatial pipeline and discovered that all imscores are 0. What could be the potential problem? The dataset is same Visium Breast cancer, although any dataset tested yields …
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Dear David Dooling,
My name is Davide Chicco and I am a scientific associate researcher working at the Peter Munk Cardiac Centre.
I'm having a problem with the SEER dataset, and since you wrote a …
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Hello,
I’m contacting you to understand better if there is any restriction on using the scTranslator model for research purposes. I've tried sending you an email directly, but your email server bl…
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I have already completed the Data Visualization part,
Creating the issue to create the pull request.
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Hi @estellad, thank you for getting in touch regarding adapting your workflow materials from the BC2 conference for inclusion in the book.
As we discussed by email, I'm opening some GitHub issues s…
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Hi,
I am currently analysing a human transcriptome (both RNA-seq + miRNA-seq) dataset from myometrium samples for which paired proteomic data will be acquired v. soon. I was looking for approaches …
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it has an error when running the example.py
urllib2.HTTPError: HTTP Error 404: Dataset 'lung-cancer-ontario' not found on mldata.org.
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## TCGA heatmap has a couple issues that need to be addressed:
- [ ] Make sure we are using the right TCGA MAF file (i.e: not CRCh37)
- [ ] Filtering out mutations that do not impact MANE transcript…
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# [Project Addition]: Breast Cancer Detection using DL - with Web App
## Description
**Aim of the project**: The aim of this project is to develop a Breast Cancer Detection system using Deep Lea…
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Hi there,
I have used BayesPrism to deconvolute my datasets utilizing reference data from a public database. My datasets consist entirely of human bone marrow mesenchymal stem cells and are not cance…