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- [x] rfc https://github.com/cbioportal/cbioportal/issues/7920
- [x] backend support https://github.com/cBioPortal/cbioportal/issues/7932
- [x] OncoPrint track - similar to clinical track https://gi…
jjgao updated
6 months ago
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- https://docs.cbioportal.org/6.-web-api-and-clients/api-and-api-clients#r-client
- https://www.cbioportal.org/webAPI
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For [this table](https://www.cbioportal.org/results/structuralVariants?cancer_study_list=msk_impact_2017&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2C…
inodb updated
1 month ago
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fetch("https://genie-public-beta1.cbioportal.org/api/column-store/filtered-samples/fetch?", {
"headers": {
"accept": "*/*",
"accept-language": "en-US,en;q=0.9",
"cache-control": "no-cach…
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Due to end of support for MySql 5 on Oct 2023, cbioportal DB has to migrate to MySql 8
Issues
MySql 8 restricts allowPublicKeyRetrieval.
- [ ] To bypass this upgrade to 8.0.15 in pom.xml
- [ …
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- [x] Methylation tab cBioPortal/cbioportal#7683
- [ ] Should we support continuous CNA data?
- [x] Support patient level enrichments analysis cBioPortal/cbioportal#4637
- [x] treat overlapping pa…
jjgao updated
6 months ago
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https://genie-public-beta.cbioportal.org/study/summary?id=brca_akt1_genie_2019%2Claml_tcga_pan_can_atlas_2018%2Cacc_tcga_pan_can_atlas_2018%2Cblca_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018…
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I'm trying to follow your walk through with the TCGA PanCancer Head and Neck cancer example but when I try to import data from cBioPortal I get the following error:
I am on a macOS Catalina v10…
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- [ ] Only show dropdown with examples on first click, once you start typing remove it
- [ ] Move reference genome to a separate button (reference genome) similar to datatype
inodb updated
1 month ago
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We need an api to determine whether alignments exists at all for a given transcript so that we don't have to pull all alignments just to determine that.
After discussion, we would like to add pagin…
jjgao updated
5 years ago