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Also see #288
![image](https://user-images.githubusercontent.com/11753634/1020764…
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There turns out to be quite a number of what I want to call "complex phenotypes". A complex phenotype is a phenotype whose definition involves more than one entity. So far the Phenotype Editor have id…
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Sharing progress on molecular glyco-phenotype (MGPO) modeling for feedback from the group. @cmungall, @drseb, @balhoff, @mellybelly, @jpgourdine
The **spreadsheet** [**here**](https://github.com/mona…
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Orphanet lists quite a few [ring chromosome syndromes](https://www.orpha.net/en/disease/classification/sibling/158293?orphaCode=363203&plus=1&search=Autosomal-trisomy&entry=98130&mode=name). In a revi…
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We will initially proceed with our initial decision to split 'Predicted' from 'Experimental' Functional impact annotations - and model these as separate VA types. Our rationale was that:
- they have …
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VEuPathDB (http://veupathdb.org) need following terms for Fungi phenotype annotation:
- hypoxia
- oxidative stress
We found the terms in MP and they are asserted under 'mammalian phenotype' in UP…
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See https://github.com/obophenotype/cell-ontology/issues/572#issuecomment-762830332
This is dependent on all relevant terms being added to PATO.
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I was looking at the “unknowns” and thought it was odd to see these 'unknown' genes annotated to
“regulation of cell size”
100.00% 48.00 YCR061W, YBR093C, YGR111W
I don't think we should ann…
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I have many abnormal response to terms to chemical entities but also sometimes to a biological process
PATO_0000077 response to
AbnormalResponseToEntity
Maybe also children in/decreased/absen…
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Genome-wide phenotypic analysis of growth, cell morphogenesis and cell cycle events in Escherichia coli (2018) Manuel Campos, Sander K. Govers, Irnov Irnov, Genevieve S. Dobihal, François Cornet,
and…