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Hello,
I am trying to use the annotation module on its own and getting back 2 errors that I am unable to troubleshoot on my own.
My command is as follows with STARsamples leading to a text file …
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Hi!
I followed the instructions to download all resources as the example you provided in the README (using mm10 instead of hg38):
`~/COMPSRA$ java -jar COMPSRA.jar -tk -dr -ck miRNA_hg38,piRNA_…
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Hi is there anything i need to setup before i can run this pipeline?
i can run nextflow with rnaseq image so shouldn't be nextflow installation problem.
after git clone the folder, running the tes…
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### Description of the bug
Hiya,
thank you for the work on the pipeline!
Currently, when I try to run the pipeline using my own (paired-end) data, it seems that there are a few steps in the pipe…
dmgie updated
1 month ago
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Greetings,
I cloned the latest version of circminer, completed the installation (make) and builded index for hg38 reference genome.
I keep getting the same error after the circRNA detection is comp…
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### Description of the bug
I'm running into a ciriquant error since #104, specifically after this [commit 72dd514](https://github.com/nf-core/circrna/commit/72dd514cc90d19797bf3869b9427d879677582f6…
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### Description of the bug
Apparantly when running the pipeline in the cloud (AWS tower), scripts called via their absolute path (using `${workflow.projectDir}`) are not available to nextflow at runt…
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here's a consistent output of a run:
[10:05:23] INFO Beginning search for viroid-like RNAs using 10 threads... easy_search.py:108 …
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Hi there,
I've been using isoCirc successfully for a while now but this week after installing v1.0.6, it seems to be generating some errors towards the end of the process. I am able to get isocirc.…
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### Description of the bug
Hello,
Thank you for the pipeline. I am having quite trouble fully running the pipeline. I tried it with both Docker and Singularity with both master and dev branches a…