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In `grit()` and `mp_value()` specifically, we can add support for a list of columns indicating replicates vs. just a single string (so one column)
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If I have files output from AA and AC, is there a way for me to experiment with the cycle view /genome browser to investigate potential larger structures formed from my cycles/paths? Would be good if …
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> A lack of tools to precisely control gene expression has limited our ability to evaluate relationships between expression levels and phenotypes. Here, we describe an approach to titrate expression o…
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I am part of a team doing targeted sequencing of PolyG loci. We have previously been using LobSTR for genotyping polyG sequences from reads prior to a consensus making step (see https://github.com/ri…
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I am having this problem using the SAM file to identify the off-target
python ~/bin/guideseq-1.0.2/guideseq/guideseq.py identify --aligned ~/Desktop/WORKS/CODE/download/AA_1.sam --target_sequence c…
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Hi Jeff,
I am very interested in the way how `knock-knock` visualizes CRISPR outcomes. Therefore, I scratched my head for quite a few days and finally got `knock-knock` to work with one of your sam…
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The first paper to arise from the Open Source Malaria Consortium is [published today in ACS Central Science](http://pubs.acs.org/doi/full/10.1021/acscentsci.6b00086), describing Series 1. Congratulati…
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We are currently trying to validate our series 3 target. @danaklug has done some reading on target validation and we would love some feedback on the definition.
Our definition can be found [here](…
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Hi!
Our team at ViQi Inc. have been doing ML analysis on the cpg0012 dataset with a lot of success. We would now like to move on to the jump dataset cpg0016 and possibly cpg0004. However, I cannot…
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S1-1
[S1-2](https://catholicackr-my.sharepoint.com/:b:/g/personal/shan_catholic_ac_kr/EZVAYB2hIVBMtxJO30NxNkwBzJYGC58jH-4IGvmnQ97DCQ?e=TZJjMe)
[S1-3](https://catholicackr-my.sharepoint.com/:b:/g/per…