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jump-cellpainting
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Images and other data from the JUMP Cell Painting Consortium
BSD 3-Clause "New" or "Revised" License
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Bump urllib3 from 1.26.13 to 1.26.19
#114
dependabot[bot]
opened
2 weeks ago
0
CRISPR Table missing "Metadata_pert_type"
#113
afermg
opened
3 weeks ago
0
Bump requests from 2.28.1 to 2.32.0
#112
dependabot[bot]
opened
1 month ago
0
feat: include URL to final profiles.
#111
afermg
closed
1 month ago
0
update "Does JUMP contain X compound/gene?" link on FAQ
#110
AnneCarpenter
closed
1 month ago
6
fix #104: drop samples not in wells.csv.gz
#109
afermg
closed
1 month ago
3
Bump idna from 3.4 to 3.7
#108
dependabot[bot]
opened
2 months ago
0
Point to JUMP tutorial + other README Updates
#107
shntnu
closed
2 months ago
2
Specify which compounds were nominated by which source
#106
shntnu
closed
2 months ago
6
Metadata reorganisation to improve reliability
#105
afermg
closed
3 months ago
1
Missing compound (JCP2022_088778)
#104
afermg
closed
1 month ago
14
Add SMILES to compounds.csv.gz
#103
srijitseal
closed
2 months ago
5
Missing cell locations parquet, source 5, plate ATSJUM206
#102
Arkkienkeli
closed
3 months ago
8
Missing metadata parts and a bug for source 11
#101
Arkkienkeli
closed
3 months ago
8
Update on deep learning embeddings
#100
goncinious
opened
4 months ago
1
Add notebook to inspect integrated data
#99
shntnu
closed
2 months ago
1
Merging on compounds InChIKey
#98
cuongqn
closed
2 months ago
2
Spaces in the plates` folder names in two batches of source_3
#97
Arkkienkeli
closed
3 months ago
2
What are the actual controls for the CRISPR plates?
#96
timtreis
opened
5 months ago
5
Are pixel sizes the same across all sources?
#95
shntnu
opened
5 months ago
8
AGP channel looks strange/different in some sources
#94
shntnu
opened
5 months ago
2
Bump pillow from 9.3.0 to 10.2.0
#93
dependabot[bot]
closed
2 months ago
1
Unable to replicate CellProfiler pipeline output
#92
gareth-rogers-healx
closed
5 months ago
1
Bump fonttools from 4.38.0 to 4.43.0
#91
dependabot[bot]
closed
2 months ago
1
Technical confounders in cpg0016
#90
zhanggyuuuuu
closed
3 weeks ago
4
Weird batch effects in source_1
#89
niranjchandrasekaran
opened
6 months ago
0
How to obtain ORF features
#88
zhanggyuuuuu
closed
6 months ago
4
Verify whether a plate in cpg0016/source_7 are rotated
#87
shntnu
opened
6 months ago
0
Release SMILES strings
#86
wongdanr
closed
2 months ago
3
Clarify why some compounds have multiple replicates
#85
ChenyuWang-Monica
opened
7 months ago
2
Bump pyarrow from 10.0.1 to 14.0.1
#84
dependabot[bot]
closed
2 months ago
1
Bump pillow from 9.3.0 to 10.0.1
#83
dependabot[bot]
closed
5 months ago
1
Exact commit hashes for Cellprofiler pipelines used in JUMP production
#82
hanslovsky
closed
9 months ago
3
Provide prefix sizes
#81
ErinWeisbart
opened
10 months ago
2
Resolve inconsistencies in Target2 Compound InChIKeys
#80
FrenkT
closed
3 months ago
7
Reinstate Brightfield channels in LoadData CSVs
#79
kenneth-gao
opened
10 months ago
2
Provide information about missing files
#78
hanslovsky
opened
10 months ago
2
Positive controls identifiers
#77
FrenkT
closed
6 months ago
4
Report corrupt TIFF files, filter load_data where images are actually missing
#76
hanslovsky
opened
10 months ago
9
Missing labels for some wells in COMPOUND_EMPTY plates in source_1
#75
hanslovsky
opened
11 months ago
2
Fix source_7
#74
shntnu
closed
11 months ago
0
Some JCP labels may be missing in compounds.csv.gz
#73
hanslovsky
closed
11 months ago
5
Source of truth for all images with perturbation labels
#72
hanslovsky
closed
3 months ago
5
Only .parquet files in profiles directory
#71
lewismervin1
opened
1 year ago
6
how to define label in ORF dataset (cpg0016)
#70
liujunhongznn
closed
1 year ago
4
Update README.md
#69
AnneCarpenter
closed
11 months ago
0
Data source in other cell lines
#68
ChenyuWang-Monica
opened
1 year ago
6
Provide instructions for downloading images
#67
shntnu
opened
1 year ago
1
Error in illumination correction filenames for source_11
#66
shntnu
opened
1 year ago
0
Upload arm-centering-corrected CRISPR profiles
#65
shntnu
closed
2 months ago
0
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