cytomining cytominer-eval issues

cytomining / cytominer-eval

Common Evaluation Metrics for DataFrames

BSD 3-Clause "New" or "Revised" License

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issues

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add black to pre-commit and github actions

#70 alxndrkalinin closed 1 year ago
3
calculate_precision_recall() fails when replicate_groups has just one member

#69 FloHu opened 2 years ago
0
Add Demo of Hit@k

#68 michaelbornholdt opened 2 years ago
0
Issues with groupby columns

#67 michaelbornholdt opened 2 years ago
4
Add https link for cytominer-eval installation

#66 FloHu opened 2 years ago
1
Add Precision at R to precision at k

#65 michaelbornholdt opened 2 years ago
1
Remaining tests for the new precision recall

#64 michaelbornholdt opened 2 years ago
0
Quick fix to precision recall

#63 michaelbornholdt closed 2 years ago
7
`precision_recall()` counts within group connections twice but not between group connections

#62 FloHu opened 2 years ago
14
Add Hit@k functionality

#61 michaelbornholdt closed 2 years ago
7
Figure out why percent replicating is apparently insensitive to number of replicates

#60 shntnu opened 2 years ago
1
Autodoc update

#59 gwaybio closed 3 years ago
1
Refactor availability util file and add distribution comparison to grit

#58 gwaybio closed 3 years ago
7
Automate black formatting with github action

#57 gwaybio closed 1 year ago
0
Upgrade to minimum pandas 1.2 and deprecate python 3.5

#56 gwaybio opened 3 years ago
0
Refactor utility functions

#55 gwaybio closed 3 years ago
6
assert melt in enrichment

#54 gwaybio opened 3 years ago
0
Further optimizations

#53 michaelbornholdt opened 3 years ago
0
Intake lists

#52 michaelbornholdt closed 3 years ago
11
Running metric_melt several times

#51 michaelbornholdt opened 3 years ago
3
Add enrichment operation

#50 michaelbornholdt closed 3 years ago
12
Add Enrichment Analysis

#49 michaelbornholdt closed 3 years ago
1
R API for "plyr-ing" similarity matrices

#45 shntnu closed 3 years ago
0
Adding euclidean option for grit calculation

#44 gwaybio opened 3 years ago
1
[hotfix] demo link

#43 gwaybio closed 3 years ago
0
Adding a Cell Painting demo

#42 gwaybio closed 3 years ago
0
Adding pip instructions

#41 gwaybio closed 3 years ago
1
Update docs for release

#40 gwaybio closed 3 years ago
1
Adding median to summarize replicate z-scores in grit

#39 gwaybio closed 3 years ago
2
Add option to summarize replicate z-scores from controls as medians

#38 gwaybio opened 3 years ago
8
Adding option to output median pairwise correlation

#37 gwaybio closed 3 years ago
1
Specify option to output median pairwise replicate correlations

#36 gwaybio closed 3 years ago
0
Update documentation

#35 gwaybio closed 3 years ago
0
Fixing conf path

#34 gwaybio closed 3 years ago
0
Adding readthedocs requirements and yaml file

#33 gwaybio closed 3 years ago
0
Fixing conf.py import

#32 gwaybio closed 3 years ago
0
Initializing sphinx autodoc

#31 gwaybio closed 3 years ago
0
Skip similarity matrix calculation for mp-value

#30 gwaybio closed 3 years ago
1
Skip calculating similarity matrix for mp-value

#29 gwaybio closed 3 years ago
0
Support multiple columns as replicate indicators

#28 gwaybio opened 3 years ago
2
Adding README

#27 gwaybio closed 3 years ago
0
Add mp-values

#26 koalive closed 3 years ago
6
Adding comparison to mp-value

#25 koalive closed 3 years ago
2
Add reporting option to percent_strong

#24 gwaybio opened 3 years ago
0
Implement Mahalanobis distance to negative controls

#23 shntnu opened 3 years ago
0
Define precision and recall @ k

#22 shntnu opened 3 years ago
0
Define percent strong

#21 shntnu opened 3 years ago
9
Define grit

#20 shntnu closed 3 years ago
2
Read methods paper comparing approaches for bioactivity hits

#19 shntnu closed 3 years ago
1
added assertion error for missing replicates

#18 hillsbury closed 3 years ago
3