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https://cytoscape.org/
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I think it would be a plus if the output of MONET would be compatible with cytoscape input. In this way we could better visualize the network modules.
Thank you.
Best Regards, José
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#### Description
I downloaded github.com/plotly/dash-cytoscape/blob/main/demos/usage-image-export.py and executed it using python 3.12.3. It normally starts, but in the browser I get the bellow e…
bfr42 updated
3 months ago
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@kdbanman, this is a followup of our earlier discussion.
I've managed to get _something_ working with the container method as follows
``` javascript
var cy = Cyto({
container: this.$()[0],
style…
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**Version**
poppunk version: 2.5.0
**Commands**
poppunk_assign --db GPS_v4 --query qfile.txt --output poppunk_clusters --threads 8 --external-clustering meta.csv --update-db
poppunk_visualise …
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I think another main action that other users and myself would like to be able to do is filter nodes/edges(i.e. [this](http://js.cytoscape.org/#eles.filter) ), where the usage would be something like
…
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would it be possible to get to make a download available of the MS2LDA network to upload into CytoScape e.g.?
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Cytoscape 3.7 will include much more annotation support.
~~https://github.com/cytoscape/cytoscape.js-popper May be a helpful extension for implementing this.~~ (see comments below)
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If you delete the EM app and then try and to reinstall just the EM app through the App Store but you have EM collection installed it will think that EM is still installed an it won’t let you install …
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Each of you will be installing the software Cytoscape on your computers.
Everyone create their own folder labelled by netid which includes your work with Cytoscape on the data files that I've provide…