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Hi everyone,
I've noticed that Pygam calibration is forced in the DeepLC 2+ versions. Any reason for that? According to my experience with DeepLC (v. 1.1.2), your default linear calibration usually…
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Issue #12 from May 2020 response was:
>>yes it is possible to train new models. The python scripts to retrain are available in "figures_without_models.zip" here: >>https://doi.org/10.5281/zenodo.3706…
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Hello,
I am fairly new to working with proteomics data but would like to use MS2PIP to rescore output from MSGF+. The [original data from a PRIDE](https://proteomecentral.proteomexchange.org/cgi/GetD…
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Hi,
we tried to calibrate DeepLC using a list of peptides, some of which had modifications.
This modification caused the crash: "Label:13C(5)15N(1)"
it is defined in Unimod as well as in your u…
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When I only read the first 100 lines of the file, it ran smoothly, but when I read all the file data, an error occurred.
this is traceback:
KeyError: 'Se'
Traceback:
File "/deeplc/deeplc_streaml…
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Hi,
I've noticed that starting from version 2.0.4 update I get much worse RT prediction accuracy compared to version 1.1.2.
I have a set of peptides (~2000) which is split into two parts - one for…
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Hi again, another issue comes up when i skip deeplc and percolator is started, It seems to have difficulty finding the .pin created by ms2pip. Here is the log
```
Using 12 of 12 available CPUs.
R…
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Hi
I want to use deeplc to predict retention times for some peptides so I just use deeplc from GUI.
However, there are some problem like below.
2023-05-28 22:43:39 - INFO - Using DeepLC version…
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## Description
Using a Tensorflow model for a regression task. I am using PyTorch NDArrays because Tensorflow ones do not support get and set methods, which I need in my Translator class, but I conve…
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Dear all,
I run MS2PIP on a workstation which would has 24 cores and therefore set --num_cpu accordingly. however, when running the program, there is a warning that "NumExpr detected 24 cores but '…