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DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
https://iomics.ugent.be/deeplc
Apache License 2.0
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Cannot add modifications
#83
grimace9527
opened
1 month ago
12
Pass verbosity to `predict` and DeepLC Retrainer
#82
RalfG
closed
2 months ago
0
SciPy dependency required?
#81
RalfG
closed
1 week ago
1
Update test.yml
#80
RobbinBouwmeester
closed
3 months ago
0
Update to tf 2.15 >
#79
RobbinBouwmeester
closed
3 months ago
0
Documentation or reference for missing models
#78
vrkosk
closed
1 month ago
2
Datasets
#77
xiaosiruwei
opened
4 months ago
1
Take Unimod modification compositions from psims.controlled_vocabulary.unimod
#76
vrkosk
opened
4 months ago
2
Tons of warnings when using iTRAQ4plex or iTRAQ8plex
#75
vrkosk
opened
4 months ago
3
Cholesky AttributeError from DeepLC fix by down versioning to scikit-learn==1.3.2, scipy==1.11.4
#74
KarlClauser
closed
4 months ago
1
Documentation: table of peptide properties of training data sets
#73
vrkosk
closed
5 months ago
2
Fix GUI publish workflow
#72
RalfG
closed
7 months ago
0
GUI DeepLC errors
#71
MassambaNdiaye
closed
8 months ago
3
data set
#70
HR-RH
closed
8 months ago
0
Update CI workflows
#69
RalfG
closed
9 months ago
0
Avoid some dependencies
#68
RalfG
closed
9 months ago
0
How can I get the PSI-MS format for the 'modifications' column?
#67
ec-ho-ra-mos
closed
1 year ago
12
How is it possible to predict RT when DeepLC doesnt know the LC gradient
#66
candidaorelmex
closed
5 days ago
5
change pypi to token
#65
RobbinBouwmeester
closed
1 year ago
0
Minor tweaks
#64
RalfG
closed
1 year ago
0
Training new models
#63
KarlClauser
closed
1 year ago
3
How to configure support for selenocysteine in its carbamidomethylated form?
#62
KarlClauser
closed
1 year ago
2
Minor tweaks to plotting code, fix missing entry in manifest
#61
RalfG
closed
1 year ago
0
Fix memory leak due to repeatedly calling model.predict(...)
#60
markmipt
closed
1 year ago
0
Pygam calibration is the only option in the latest version
#59
markmipt
closed
1 year ago
5
batch_num is not used anymore in the resent versions
#58
markmipt
closed
1 year ago
3
deeplc gui
#57
HR-RH
closed
1 year ago
4
Error during calibration using modified peptides
#56
steffenlem
closed
1 year ago
4
I cannot run it on website when my file getting bigger
#55
hetaofan
closed
1 year ago
2
Low prediction accuracy for versions 2.0.4+
#54
markmipt
closed
1 year ago
3
error using GUI to predict rt
#53
sehooni
closed
1 year ago
3
Fix Streamlit web server
#52
RalfG
closed
1 year ago
0
Psm utils integration
#51
RobbinBouwmeester
closed
1 year ago
0
fix load model
#50
ArthurDeclercq
closed
1 year ago
0
Optimized library usage (~85% reduce in DeepLC prediction time)
#49
markmipt
closed
1 year ago
0
Error when using unmodified peptide to train and using modified peptides to test
#48
WeiqiangChen
closed
2 years ago
7
psm_utils integration and code refactoring
#47
RalfG
closed
1 year ago
0
error using https://iomics.ugent.be/deeplc/
#46
WeiqiangChen
closed
2 years ago
3
psm_utils integration and code refract
#45
RobbinBouwmeester
closed
2 years ago
0
How to convert peptide modifications of maxquant output file to MS2PIP-style
#44
lbwfff
closed
2 years ago
5
Make `gooey` an optional dependency
#43
RalfG
closed
2 years ago
0
New GUI using Gooey, PyInstaller, and Inno Setup
#42
RalfG
closed
2 years ago
0
Fix default model selection
#41
caetera
closed
2 years ago
0
The last of default models is selected as the best one
#40
caetera
closed
2 years ago
4
pip install on Python 3.10 not working correctly
#39
levitsky
closed
2 years ago
9
add scikit-learn dependency
#38
paretje
closed
2 years ago
0
scikit-learn / sklearn missing from dependency list
#37
RalfG
closed
2 years ago
2
Deeplc docker GPU support
#36
Hendricks27
closed
2 years ago
2
Use importlib to get installed version
#35
RalfG
closed
3 years ago
0
negative retention times
#34
Seb-Leb
closed
3 years ago
4
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