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1. How to benefit from this high throughput data set based on library of around a million of yeast double deletion mutants?
Their fitness score is the colony size relative to WT (Pairwise interactio…
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Hi Shaun,
I have generated my own reference libraries for mulitple primers I am using. Details and the datasets (fasta formatted for dada2::assigntaxonomy and insect::learn, as well as the rds produ…
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Originaly I created RankHeatmap() as a small tweak to the source of stats::heatmap(), basically just removing the layout() stuff so that I could embed such heatmaps within a larger layout.
Now, since…
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This would be cool:
http://www.mathworks.com/help/bioinfo/ref/clustergram.html?refresh=true
![image](https://cloud.githubusercontent.com/assets/1865834/7623990/4e4661b0-f9e2-11e4-9187-f947d3840894.p…
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the implementation of hierarchical clustering is finished - there are probably still a few ways to optimize it, but it is working. The return value with two function is only temporary, still not sure …
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Currently the graph is rendered using the d3 library. It is currently rendered left to right in the renderLogs method.
Add a button to transform the graph rendered to instead be top down.
Checklis…
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Thanks for this nice tool. From the tutorial you provide I have this results in `cluster_network_1_scores_1.tsv` file
```
# Observed cut height: 0.9583508
# Observed size of largest cluster at obse…
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Hi!
Really nice package, thank you! I am trying to modify the colouring for treeplot. I was able to modify the code for gseaplot2 pretty easily by changing the function code, but doing this for treep…
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Hi Rebecca,
Thanks for the handy package!
Would it be a good idea to allow a distance matrix input?
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@mem48
Hi - thought I would test this out for some questions working through your script.
Is there a reason you don't use data.table?
Age Table - What are Mode1 and 2? (Most often and second m…