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When I zip the Homo_sapiens.GRCh38.dna.primary_assembly.fa to .gz file and add this link in the download.sh, it will show the error: gzip: stdin: not in gzip format.
If I use .fa file directly, …
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```
http://forums.parallax.com/showthread.php?141129-Propeller-DNA-(PPUSB2)-config-f
iles.&p=1109244&viewfull=1#post1109244
Original text of the request:
Attached below are the propeller-load confi…
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### What happens?
Using DuckDB CLI, both v0.10.3 70fd6a8a24 and sqlite_scanner version 50b7870.
On Linux, receive file error. Exact same file (16GB) on Windows loads.
D ATTACH '~/DataAnal…
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Hi Rory,
I am simulating SARS-CoV-2 diluted in a bacterial environment. My configuration file looks as follows :
```
output_path = "$SIM_DIR/pod5_files"
target_yield = $TARGET_YIELD
pore_type =…
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The DNA track is not visible from GDV :
(DNA track rendering works with text files that have to be imported by the browser)
- cause : the browser root of JBrowse search for text files in GDV director…
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Hi developers,
Thanks for creating Cas-OFFinder!
I am very interested in incorporating it into our analytical pipeline. However, seems that there are several unsolved issues in Cas-OFFinder v2 …
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Strictly speaking, this is a bug in the tool that has generated the genbank file that I am using (GeneData Biologics). It writes out the date with a single digit day number, if it is less than 10, so …
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I received my paired end ITS fastq files as demultiplexed, and merged files with both forward and reverse reads together per fastq file.
I have modified the dada2 ITS pipeline a bit to reflect this…
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Hello, I am trying to replicate the generation of the Year1 centromeric satellite and segmental duplication annotations as described for usage with the `contig.inclusion.stats.R`. If I understand corr…
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I'm running clair3 with the --use_whatshap_for_final_output_haplotagging option (see clair3 command at bottom) on a 1.1TB bam generated on the ONT platform (basecalling and alignment with dorado/minim…