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`chr6 39137946 Minda_116 N . PASS SVLEN=117365;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:113485:0:1:0:1:0,ILL_gridss110bf_1477h,ONT_severus_DUP7080,ONT_ID_67232_2,PB_severus_DUP6128,PB_ID_42826_2,ILL_2…
jzook updated
2 weeks ago
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I analyzed my NGS data using Illumina DRAGEN Bio-It Platform on the AWS Cloud last year. The DRAGEN Complete Suite version I used was 3.10.4a.
Now the DRAGEN Complete Suite version is updated to 4.…
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I can see why the build fails. The dependencies uploaded to https://hackage.haskell.org/package/dragen are too strict for lts-13.2, and do not need to be.
```
$ stack install dragen --resolver lts…
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`chr4 14331587 Minda_103 N . PASS SVLEN=578;SVTYPE=INS;SUPP_VEC=ONT_severus_INS17703,ONT_Sniffles2.INS.DBM3,ONT_i_277,PB_severus_INS15603,PB_Sniffles2.INS.D5M3,PB_i_665
`
https://v2.genomeribbon.com…
jzook updated
2 weeks ago
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Examples:
- DX208004_01 chr13:32,911,530-32,911,900
- DX195929_01 chr2:25498395
- DX194025_01 chr13:48941612
- DNA2309843_02 chr7:5995692 (SVA insertion in PMS2)
Tools:
- MELT (https://www.ncbi.nlm.n…
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When submitting job with Nextflow to aws batch, the default entry point ["python3","/root/quickstart/dragen_qs.py"] will prevent the command defined in Nextflow script from being parsed properly by th…
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### Beschrijf zo duidelijk mogelijk de feature
Er is besproken dat er werkende kogelwerende vesten worden toegevoegd voor pol…
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`chr3 139998693 Minda_97 N N]chr3:193903982] . PASS SVLEN=53905289;SVTYPE=BND;SUPP_VEC=PB_severus_INV4833,ONT_severus_INV5593,PB_ID_53317_2,ONT_ID_12247_2,PB_Sniffles2.INV.2ECM2,ONT_Sniffles2.INV.30AM…
jzook updated
2 weeks ago
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`chr6 70580536 Minda_119 N . PASS SVLEN=127649;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:116200:0:1:0:0:0,ILL_gridss113bf_4050h,PB_severus_DUP6199,ONT_severus_DUP7149,PB_ID_42846_2,ILL_2591031218:2,PB_…
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I get a "segmentation fault" issue when executing this command:
dragen-os -r /work3/vca3/hash_ref -1 mrna-alpha-x1_S1_L001_R1_001.dmx.fastq.gz -2 mrna-alpha-x1_S1_L001_R2_001.dmx.fastq.gz > test.sa…