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Hi there,
I was trying to calculate the TSS enrichment score using signac version 1.11 by adding an extension up to 2000 bp from TSSs. I see that the results produced have a high enrichment value (up…
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This issue builds a concrete proposal off the previous discussions:
https://github.com/suttacentral/suttacentral/issues/2418
https://github.com/suttacentral/sc-data/issues/211
## enrichment d…
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Enrichment analysis is empty.
```r
> head(geneList)
NQO1 PAPPA MGST1 VCAN CCN2 CCND2
5.36 3.17 2.99 2.96 2.35 2.26
> result dim(result@result)
0 8
```
but overrepresentation a…
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Dear @Adoni5 @mattloose
I hope you guys are doing well. I am trying to implement the new version of readfish with dorado on flongle playback data. But, I am getting the same error:
"ValueError: cha…
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The simplest form of exact match search and replace, to work exclusively against text columns.
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I have a problem with the enrichment. I use de command line and obtain this message when i execute it:
Exception in thread "main" java.lang.NullPointerException
at analysis.promotersites.Promoter…
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We should find a way to improve the speed/performance of this step.
The R Markdown has a lot of `for` loops. Refactoring to use tidyverse paradigms should help a lot.
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I am very interested in your article, but I don’t know the specific calculation method of your enrichment. Is exp_tot divided by beads_tot?
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Currently, racking the enrichment process within bim2sim requires manual checking of the resulting parameters.
For practical applications we need information on the data that was obtained from the i…
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### The purpose and use-cases of the new component
The events receiver provides logging based on the events endpoint and it’s usually missing information like which related workloads and resources …