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LooseLab
/
readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Readfish is not running for Flongle Playback Data
#365
Nirmal2310
opened
3 days ago
5
High count of no-barcode that map to my targets
#363
lborcard
closed
2 weeks ago
15
next release candidate checklist
#362
Adoni5
opened
2 weeks ago
0
Feature/pass reads
#361
Adoni5
opened
2 weeks ago
0
chore: update FAQ
#360
Adoni5
opened
2 weeks ago
0
Dorado Alignments
#359
Adoni5
opened
2 weeks ago
0
Error with flongle flow cell splitting
#358
Dcwrenn
opened
1 month ago
5
comparison between MinKNOW and Readfish
#357
ylang0825
closed
1 month ago
4
Handshake failed with fatal error SSL_ERROR_SSL: error:1000007d:SSL routines:OPENSSL_internal:CERTIFICATE_VERIFY_FAILED
#356
daanishmahajan
closed
1 week ago
4
chore: update github workflow actions
#355
alexomics
opened
1 month ago
1
Change Duplex version to 2024.1.0
#354
Adoni5
closed
1 month ago
0
Having only one region in toml caused issue
#353
jennieli421
closed
2 weeks ago
12
add live poly a and skip poly a feature
#352
satriobio
closed
1 week ago
2
Feature/check minknow
#351
mattloose
closed
1 month ago
10
Circular Binary Segmentation
#350
tom-murray98
closed
2 months ago
3
Detect MinKNOW version and warn.
#349
mattloose
closed
2 weeks ago
1
Problem communicating with basecaller after MinKnow update
#347
gc-content
closed
1 month ago
10
Playback issue
#345
alexomics
closed
2 months ago
14
Dorado plugin
#344
mattloose
closed
1 month ago
6
Question about Readfish basecalling performance for messy samples
#343
jamesemery
closed
2 months ago
6
Depletion setting and unexpected behavior
#341
jennieli421
closed
3 months ago
2
toml_live handling issue
#340
mattloose
opened
4 months ago
0
location of readfish output
#339
bjaysheel
closed
3 months ago
4
Provide additional TOML files which provide examples of host depletion and other use cases for readfish.
#338
mattloose
opened
4 months ago
0
Not being able to finish the tutorial/test
#337
franztastic
closed
4 months ago
6
readfish with just depletion?
#336
josephhughes
closed
3 months ago
4
Readfish and boss-runs in 2024
#335
jelber2
closed
4 months ago
3
readfish stats on-target median read length and N50 always 0B
#334
maximilianmordig
closed
3 months ago
4
Example barcode balancing
#333
ahfitzpa
closed
1 month ago
7
Error when validating if the name of the reference genome contains dots
#332
bernatgel
closed
4 months ago
3
Adding additional .mmi extensions to all possible fasta file format l…
#330
mattloose
closed
5 months ago
9
Readfish intermittently crashes during barcoded experiment
#329
jamesemery
opened
5 months ago
5
Validation of decisions listed in `Barcodes`/`Regions` in Toml
#328
Adoni5
opened
5 months ago
1
Change type on --wait-for-ready to int
#327
Adoni5
closed
5 months ago
0
readfish validate reference file name check
#326
speleonut
closed
1 month ago
3
readfish stats
#325
alexomics
closed
3 months ago
8
Feature/duplex
#324
Adoni5
closed
2 months ago
5
Fix changing directory after 60 seconds if no run folder
#323
Adoni5
closed
6 months ago
2
Sequencing summary files for human genome experiment
#322
maximilianmordig
closed
4 months ago
8
Question: Determining Required Percentage Similarity and Handling Database Input
#321
ahfitzpa
closed
5 months ago
5
Close Mention of iter_align and iter_cent in common Gotcha's #302
#319
Adoni5
closed
5 months ago
2
cannot find guppy_6 branch
#318
bjaysheel
closed
7 months ago
3
Duplex plugin
#317
Adoni5
closed
1 month ago
1
Extend waiting up to 60 seconds time limit to 300 seconds for folder to appear
#314
Adoni5
closed
5 months ago
1
Closes issue #312
#313
mattloose
closed
8 months ago
0
Unblock time incorrectly specified as int
#312
mattloose
closed
8 months ago
1
Issue309
#310
mattloose
closed
8 months ago
3
Bulkfile links don't work in docs
#309
mattloose
closed
8 months ago
1
Argument should be in base args?
#308
mattloose
closed
7 months ago
6
Implement filtering of base calls and alignments
#306
Adoni5
closed
6 months ago
2
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