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LooseLab
/
readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Implement filtering of base calls and alignments
#306
Adoni5
closed
7 months ago
2
Filtering implementation epic
#305
Adoni5
opened
8 months ago
16
Document `_filter.py`
#304
Adoni5
closed
7 months ago
1
Markdown fixes
#303
Adoni5
closed
6 months ago
3
Mention of iter_align and iter_cent in common Gotcha's
#302
Adoni5
closed
7 months ago
4
Move Changelog to docs/CHANGELOG.md
#301
Adoni5
opened
9 months ago
1
Updating README to address Apple Silicon grpcio issues.
#300
mattloose
closed
9 months ago
1
Issue289/fix-region-requirement and add Changelog
#299
Adoni5
closed
9 months ago
0
Names are confusing in the stats module
#298
Adoni5
opened
9 months ago
0
Resolve barcode region issue.
#297
mattloose
closed
9 months ago
1
Fix logo src in README.md
#296
Adoni5
closed
9 months ago
0
Update CI.yml
#295
Adoni5
closed
9 months ago
0
Can't have external dependencies on PyPI
#293
Adoni5
closed
9 months ago
0
Hotfix/vendored-read-until
#292
Adoni5
closed
9 months ago
1
Fix CI deployment failing to find /dist (maybe)
#290
Adoni5
closed
9 months ago
0
Barcoded adaptive sampling not working as expected
#289
jamesemery
closed
9 months ago
11
Fix broken refactor links
#287
Adoni5
closed
9 months ago
0
BUG: long reads segfault stats
#286
Adoni5
opened
9 months ago
0
readfish stats crashes without indicating why if fed promethION data without the --prom flag
#285
mattloose
closed
9 months ago
3
Provide PromethION Bulkfiles
#284
mattloose
closed
8 months ago
2
Issue273/README fixes and HTML stats
#283
mattloose
closed
9 months ago
2
#
#282
alexomics
closed
9 months ago
1
read-until version is missing from docs
#281
satriobio
closed
9 months ago
2
CI QOL improvements
#280
Adoni5
closed
9 months ago
1
CI QOL update, including Publish package to PyPI on tag
#279
Adoni5
closed
9 months ago
0
OSX Silicon install issue grpcio
#278
mattloose
closed
9 months ago
2
Pip version of readfish
#277
Adoni5
closed
9 months ago
2
FAQ questions to fix on release
#276
Adoni5
closed
8 months ago
3
VersionInfo class for readfish
#275
Adoni5
opened
9 months ago
1
Github action for auto releasing to PyPI when release is made
#274
Adoni5
closed
9 months ago
1
Documentation fixes
#273
Adoni5
closed
9 months ago
1
Image does not display.
#270
mattloose
closed
9 months ago
1
Fix link to built FAQ.md
#269
alexomics
closed
9 months ago
0
ReadMe Docs need to be updated with current images and performance metrics.
#268
mattloose
closed
9 months ago
2
Refine scope of documentation deployment on closed PR
#267
Adoni5
closed
9 months ago
0
Update faqtory.yml
#266
Adoni5
closed
9 months ago
0
Issues suggestion needs path to FAQ.yaml fixing
#265
Adoni5
closed
9 months ago
0
We deploy the docs for any closed PR. This should be for a closed PR into the refactor/main branch.
#264
Adoni5
closed
9 months ago
0
We don't run the CI pipeline for changes to just the README.md.
#263
Adoni5
closed
9 months ago
1
Addressing CI issues
#262
Adoni5
closed
9 months ago
1
Fine tuning ReadMe
#261
mattloose
closed
9 months ago
0
Update ReadMe for Apple Silicon and other ONT platforms.
#260
mattloose
closed
9 months ago
0
Refactor rebased
#259
Adoni5
closed
9 months ago
0
Future plan - write a mapper plugin for readfish that can share a reference library.
#258
mattloose
opened
9 months ago
3
update example readfish toml file?
#252
danchurch
closed
10 months ago
2
KeyError: >512 when running Readfish 0.0.11a4 on PromethION flowcells
#251
jamesemery
closed
10 months ago
12
Modify TOML of FLOW-MIN114 & SQK-LSK114
#250
jennieli421
closed
12 months ago
9
Ask about simuliation without Minknow device
#249
ElroyLR
closed
12 months ago
1
Ask about simuliation without Minknow device
#248
ElroyLR
closed
9 months ago
3
Multiplex bulk fast5 simulation on Promethion
#247
lkwhite
closed
1 year ago
1
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