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LooseLab
/
readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Sample source of bulk fast5 provided in tutorial
#245
jennieli421
closed
1 year ago
1
Cannot connect to minknow remotely - Connection refused
#244
cmfield
closed
1 year ago
10
Documentation for "summary" command? ("alt" and "random" rows?)
#243
danchurch
closed
1 year ago
3
TOML target specification
#242
jennieli421
closed
1 year ago
10
Problem reproducing playback in the tutorial
#240
jennieli421
closed
1 year ago
19
Meaning of output in log file
#239
pwh124
closed
1 year ago
4
Issues bot
#237
Adoni5
closed
9 months ago
1
pre-commit
#236
Adoni5
closed
9 months ago
2
Update mappy.py
#235
mattloose
closed
9 months ago
2
readfish 0.0.11a4 on MinION sequencing toml requires break_reads_after = 1.0
#234
rainwala
closed
9 months ago
10
read end reason
#233
ylang0825
closed
1 year ago
1
old biopython
#231
rzolau
closed
1 year ago
1
Question R10/Q20+ barcoding
#230
Arne-OHMX
closed
1 year ago
1
conda installation fails in Ubuntu 22.04
#229
brunoasm
closed
1 year ago
2
add dynamic reloading of mapping index
#228
W-L
closed
1 year ago
5
Issue 225
#227
Adoni5
closed
1 year ago
3
Issue_225
#226
Adoni5
closed
1 year ago
0
Refactor dead code
#225
Adoni5
closed
1 year ago
1
Odd and even field
#224
ylang0825
closed
1 year ago
4
Add in MappyRS as alternate mapper for barcode targets
#223
Adoni5
closed
1 year ago
3
readfish can'tfind MinKnow (22.10.7)
#222
rdieterich
closed
1 year ago
2
load config error
#221
nuriabonetm
closed
1 year ago
28
New Aligner
#218
Adoni5
closed
1 year ago
2
Add an odd_even field on readfish barcode_targets
#217
Adoni5
closed
1 year ago
1
Odd/Even channels on barcode aware sequencing
#216
Adoni5
closed
1 year ago
4
which branch of readfish is suitable?
#215
Flower9618
closed
1 year ago
14
Playback issue from own custom sequencing run
#214
StevenVerbruggen
closed
1 year ago
5
[Question] Testing Readfish on FAST5 file without playback
#213
harisankarsadasivan
closed
1 year ago
1
Optimizing breaktimes
#212
ash-kh
closed
1 year ago
2
"MinKNOW not found on this computer"
#211
merfre
closed
1 year ago
1
update address specification and port for RUClient
#209
W-L
closed
1 year ago
0
Boss Runs Future compatibility
#208
Adoni5
closed
1 year ago
0
Readfish with Guppy 6.2.1
#207
merfre
closed
1 year ago
3
readfish not work
#206
windforclouds
closed
11 months ago
3
Issues running test simulation on guppy 6 minKnow 5 branch
#205
santiago-es
closed
2 years ago
10
TLS error when running unblock-all
#204
melkramer
closed
9 months ago
4
bulk fast5 playback with minknow 22.05.05
#203
nick297
closed
2 years ago
6
A question on barcode-aware readfish
#202
hasindu2008
closed
9 months ago
16
Readfish using guppy 6 and minknow 5 branch
#201
neavemj
closed
9 months ago
8
Installing ReadFish on GridION
#200
melkramer
closed
2 years ago
3
Readfish on prom
#199
hasindu2008
closed
2 years ago
9
Pointer to Miknow core 4.0 or 3.6
#198
diriano
closed
2 years ago
0
Reads not treated by adaptive sampling
#197
lborcard
closed
2 years ago
2
Test connections functionality
#196
Adoni5
closed
9 months ago
2
Guppy Server Connection Error
#195
12032345
closed
2 years ago
4
Advice on recording bulk playback file
#194
samhorsfield96
closed
2 years ago
2
Handshake failed with fatal error SSL_ERROR_SSL
#193
syncrotron
closed
2 years ago
2
deepnanoblitz: from ru.validate import main - ImportError: cannot import name 'main' from ru.validate
#192
justinshaffer
closed
9 months ago
5
[INFO] Using Pyguppy for Read-Until: Does the compute time overhead to sequence multiple chunks scale linearly or sub-linearly?
#191
harisankarsadasivan
closed
2 years ago
1
Guppy Server Connection Error: Timeout on LOAD_CONFIG Request
#190
cognoescere
closed
1 year ago
21
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