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LooseLab
/
readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Boss Runs Future compatibility
#208
Adoni5
closed
1 year ago
0
Readfish with Guppy 6.2.1
#207
merfre
closed
1 year ago
3
readfish not work
#206
windforclouds
closed
1 year ago
3
Issues running test simulation on guppy 6 minKnow 5 branch
#205
santiago-es
closed
2 years ago
10
TLS error when running unblock-all
#204
melkramer
closed
1 year ago
4
bulk fast5 playback with minknow 22.05.05
#203
nick297
closed
2 years ago
6
A question on barcode-aware readfish
#202
hasindu2008
closed
1 year ago
16
Readfish using guppy 6 and minknow 5 branch
#201
neavemj
closed
1 year ago
8
Installing ReadFish on GridION
#200
melkramer
closed
2 years ago
3
Readfish on prom
#199
hasindu2008
closed
2 years ago
9
Pointer to Miknow core 4.0 or 3.6
#198
diriano
closed
2 years ago
0
Reads not treated by adaptive sampling
#197
lborcard
closed
2 years ago
2
Test connections functionality
#196
Adoni5
closed
1 year ago
2
Guppy Server Connection Error
#195
12032345
closed
2 years ago
4
Advice on recording bulk playback file
#194
samhorsfield96
closed
2 years ago
2
Handshake failed with fatal error SSL_ERROR_SSL
#193
syncrotron
closed
2 years ago
2
deepnanoblitz: from ru.validate import main - ImportError: cannot import name 'main' from ru.validate
#192
justinshaffer
closed
1 year ago
5
[INFO] Using Pyguppy for Read-Until: Does the compute time overhead to sequence multiple chunks scale linearly or sub-linearly?
#191
harisankarsadasivan
closed
2 years ago
1
Guppy Server Connection Error: Timeout on LOAD_CONFIG Request
#190
cognoescere
closed
1 year ago
21
simulation for Readfish
#189
Flower9618
closed
1 year ago
1
error on step 5 of "Testing basecalling and mapping." from bulkfile simulation
#188
rainwala
closed
2 years ago
14
No module named 'minknow_api.basecaller_service'
#187
Nirmal2310
closed
2 years ago
37
Fix curl command in README.md
#186
alexomics
closed
2 years ago
0
Can readfish reject reads <200bp?
#185
chilampoon
closed
2 years ago
1
Recommended settings for short reads
#184
2tony2
closed
2 years ago
2
readfish version
#183
Flower9618
closed
2 years ago
3
Failed to playback own fast5
#182
Kevinzjy
closed
2 years ago
2
testing guppy_6 branch on Ubuntu 18.04 LTS with guppy server 5.1.12 fails with "stopped with error"
#181
rainwala
closed
2 years ago
16
error when installing guppy_6 branch on Ubuntu 18.04 LTS, guppy_basecall_server version 5.1.12
#180
rainwala
closed
2 years ago
3
Readfish targets TypeError
#179
mahreenkn
closed
1 year ago
11
Generating run info
#178
alexomics
closed
1 year ago
0
dry run problems
#177
alexomics
closed
1 year ago
0
Python3.7 LRU cache compatibility
#176
alexomics
closed
2 years ago
0
Issue153
#175
alexomics
closed
2 years ago
0
Issue for tracking issues
#174
alexomics
closed
1 year ago
2
Dev branch - numpy versioning clash
#173
lfearnley
closed
2 years ago
2
summarise_fq.py writes everything to stderr
#172
vshiv18
closed
1 year ago
2
toml update frequency and method
#171
mattloose
closed
1 year ago
2
Readfish with Guppy 6
#170
hasindu2008
closed
1 year ago
45
Computer specifications for use with MinION
#169
Kav57
closed
2 years ago
2
Repeat Mac Big Sur installation
#168
kuma0077
closed
2 years ago
1
readfish dev installation issue
#167
Huanle
closed
2 years ago
4
Which sequencing experiment generated the example Bulk Fast5 file?
#166
Huanle
closed
2 years ago
3
Unifying data yields across barcodes
#165
Irsan88
closed
2 years ago
2
Barcode sf compatability
#164
alexomics
closed
2 years ago
1
R10/Q20+
#163
daniel007s
closed
2 years ago
5
Odd Playback Results
#162
carze
closed
3 years ago
1
Sample data
#161
woodoo46
closed
3 years ago
1
cannot find reference & target fields in the toml file
#160
YingziZhang-github
closed
3 years ago
1
Readfish sometimes go into a stuck state
#159
hasindu2008
closed
1 year ago
13
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