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LooseLab
/
readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Catch some "placeholder" channel positions being 0 on flongle
#384
Adoni5
closed
1 month ago
1
Fix issue340 - live TOML handling
#383
Adoni5
closed
1 month ago
0
Minor change to readme to better reflect update to 6.0 and deprecatio…
#382
mattloose
closed
3 weeks ago
2
Delete dc918797-33da-4414-9999-eb9132d22971_readfish.tsv
#381
alexomics
closed
1 month ago
0
Delete dc918797-33da-4414-9999-eb9132d22971_readfish.tsv
#380
Adoni5
closed
1 month ago
0
Issue365/flongle draw split
#379
Adoni5
closed
1 month ago
0
Revert "Fix #365"
#378
Adoni5
closed
1 month ago
0
bump all node 16 actions to node 20
#377
Adoni5
closed
1 month ago
1
feature py3.12 support
#376
Adoni5
opened
1 month ago
4
chore: drop python 3.8
#375
Adoni5
opened
1 month ago
1
Feature/deprecate guppy
#374
Adoni5
closed
1 month ago
0
readfish unblock-all Command Fails with AttributeError: number with MinKNOW v6.0.8
#373
ahfitzpa
closed
1 month ago
3
reads not unblocking as expected
#372
shair89
closed
1 month ago
8
toml_live not updated upon changes
#371
lborcard
closed
1 month ago
6
Handshake failed with fatal error SSL_ERROR_SSL: error:1000007d:
#370
adbeggs
closed
3 weeks ago
18
DRAFT Feature/minknow6 compatibility
#369
Adoni5
closed
1 month ago
2
Detect native adaptive sampling and warrn.
#368
mattloose
opened
2 months ago
0
Question: Correct configuration for switching off barcodes
#367
philipschoettler
closed
1 month ago
9
Fix #365
#366
Adoni5
closed
1 month ago
1
Readfish is not running for Flongle Playback Data
#365
Nirmal2310
closed
3 months ago
9
High count of no-barcode that map to my targets
#363
lborcard
closed
3 months ago
15
next release candidate checklist
#362
Adoni5
opened
3 months ago
0
Feature/pass reads
#361
Adoni5
closed
1 month ago
2
chore: update FAQ
#360
Adoni5
opened
3 months ago
0
Dorado Alignments
#359
Adoni5
closed
1 month ago
1
Error with flongle flow cell splitting
#358
Dcwrenn
closed
2 months ago
6
comparison between MinKNOW and Readfish
#357
ylang0825
closed
4 months ago
4
Handshake failed with fatal error SSL_ERROR_SSL: error:1000007d:SSL routines:OPENSSL_internal:CERTIFICATE_VERIFY_FAILED
#356
daanishmahajan
closed
3 months ago
4
chore: update github workflow actions
#355
alexomics
closed
1 month ago
1
Change Duplex version to 2024.1.0
#354
Adoni5
closed
5 months ago
0
Having only one region in toml caused issue
#353
jennieli421
closed
3 months ago
13
add live poly a and skip poly a feature
#352
satriobio
closed
3 months ago
2
Feature/check minknow
#351
mattloose
closed
5 months ago
10
Circular Binary Segmentation
#350
tom-murray98
closed
5 months ago
3
Detect MinKNOW version and warn.
#349
mattloose
closed
3 months ago
1
Problem communicating with basecaller after MinKnow update
#347
gc-content
closed
5 months ago
10
Playback issue
#345
alexomics
closed
5 months ago
14
Dorado plugin
#344
mattloose
closed
5 months ago
6
Question about Readfish basecalling performance for messy samples
#343
jamesemery
closed
5 months ago
6
Depletion setting and unexpected behavior
#341
jennieli421
closed
6 months ago
2
toml_live handling issue
#340
mattloose
closed
1 month ago
0
location of readfish output
#339
bjaysheel
closed
6 months ago
4
Provide additional TOML files which provide examples of host depletion and other use cases for readfish.
#338
mattloose
opened
7 months ago
0
Not being able to finish the tutorial/test
#337
franztastic
closed
7 months ago
6
readfish with just depletion?
#336
josephhughes
closed
6 months ago
4
Readfish and boss-runs in 2024
#335
jelber2
closed
7 months ago
3
readfish stats on-target median read length and N50 always 0B
#334
maximilianmordig
closed
6 months ago
4
Example barcode balancing
#333
ahfitzpa
closed
4 months ago
7
Error when validating if the name of the reference genome contains dots
#332
bernatgel
closed
8 months ago
3
Adding additional .mmi extensions to all possible fasta file format l…
#330
mattloose
closed
8 months ago
9
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