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After running the first commands for Figure 1 (01_human_clustering.R), which completed without errors, the second script (02_human_cluster_mapping.R) generates errors. Please advise
>Rscript 02_hum…
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Solicitação do Ludovic para apresentar Evid@Easy como ferramenta para tomada de decisão em reunião EIH em setembro/2021
trazer para frente as metas do ODS3, como indicado na imagem em anexo. Como e…
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- [x] check-submissions: Allow option to update a single submission instead of updating all submissions in log.
- [x] **other organism: Allow any organism to be used with the flag "other" .**
Other …
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## What
All collections currently in `staging` should be published to the `production` instance.
- The collections should include the `provider` and `render` meta data that is included in the `ved…
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Dear MAgPIE colleagues, while debugging the AR6 reporting for REMIND-MAgPIE, I also checked whether the MAgPIE reporting is internally consistent according to the + notation. Turns out it isn't. The `…
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Acknowledge all SEES sites in the enteric fever vignette
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Need to change Escherichia hermannii to the new genus name Atlantibacter. Already done in `development.tsv`. Need to do it in the taxonomy files too.
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One idea for monitoring the performance of our system is to measure how some characteristic queries run, and try to improve their speed (split off from #277). Our research team shared some initial ide…
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Breaking out from #1345
> > I probably should know about this, but I confess I don't: are we now able to Expand based purely on NGD? Is there a database of pre-computed top relationships? I recall…
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## What
The integrated ingest-api has been promoted to the staging stack. Use the support script to run the ingest-api/collections endpoint to update the collections in the staging database without c…