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there are three ways to do this.
* mapping based: map reads, call variants, build a variant call file (VCF), estimate ANI from VCF SNP calls.
* mapping based: create a new consensus genome based o…
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We have represented known frameshifts in the genome sequence as 1-2 bp overlaps in CDS features (we were once advised by Ensembl that this was the correct way to annotate these). This is necessary …
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> In fact, for three of these four animal coronaviruses, the strongest correlation between the number of viral and animal reads is for the animal species known to be infected with the virus...
The …
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Hi there,
I'd like to add another voice for providing support for longer reference sequences: it already seems useful for some genomes, and as better assembled and larger genomes come out it seems …
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Under "Visualization using a Genome Browser (IGV)", step 2 does not work, at least on usegalaxy.org:
https://github.com/galaxyproject/training-material/blame/master/topics/sequence-analysis/tutorials…
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#### Is your feature request related to a problem? Please describe.
#### Describe the solution you'd like
FAIR data point is a standard describing a REST API for creating, storing, and serving F…
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I just had an interesting idea: If we don't know who is the closest relative of an individual over the whole ARG, we could collect the spans over which each sample node is another sample's "nearest ne…
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Hello, I want to use PROmiRNA for mouse miRNA TSS prediction. While running the program, I bumped into problem like these. I wonder if it is because using the wrong -s file (gene start region gff), an…
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Apologies if this is not the appropriate place to ask questions.
I recently noticed that this repository provides test data files under the `test` directory. Could you please clarify whether these …
athos updated
7 months ago
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Dear all,
I am trying to use this tool for mapping RNAseq reads to a plant reference genome. I have 50 libraries with around 2.5Gb of data in each (2 x 100 bp). Most libraries were mapped quite ea…