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### Description of the bug
Hi Edmund,
I am raising a ticket here for the strand-flipping issue I mentioned on slack.
Bug:
BigWigs generated for PROseq samples appear to be flipped. The strand ca…
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Hello,
After running PASA annotation update pipeline, I have the updated annotation output in the GFF3 format. I am interested in understanding the specific updates made by PASA in original gene mode…
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When I try to run the map_leafcutter_cluster_to_gene part for post-processing, it gives me this error..
```
FATAL: could not open image /restricted/projectnb/casa/xqtl-pipeline/container/singul…
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We should make the usage of datasets more heterogenous across the notebooks in the docs.
Practically:
- [ ] select 1, max 3, small datasets (
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We need to create some mondo subset files for use in KGs along the following lines:
- Rare disease subset
- Rare disease subset with leaf nodes representing variants in same gene rolled up to pare…
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Hi there,
Thank you again for creating this wonderful tool! I had a question regarding your fusion gene analysis in your recent biorxiv paper: https://www.biorxiv.org/content/10.1101/2021.04.21.440…
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As demostrated below:
```
hs3163@node57:/mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis$ cat /mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis/8_celltypes_script_3 | grep sos …
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### Description of the bug
Hello, I am a co-worker of olgabot and this issue is following [issue 196](https://github.com/nf-core/differentialabundance/issues/196). Running the nf-core/differentialabu…
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Hi @kimrutherford @ValWood,
I was drafting the email to announce the changes, but I realised a few things that perhaps we should address:
* [x] A lot of "new genes" lacking references: both [pro…
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Hello @kimrutherford and @ValWood, first congrats on managing to pass the submission pipeline!
I noticed that the new submission no longer includes the mitochondrial chromosome sequence. I know tha…