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nf-core
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nascent
Nascent Transcription Processing Pipeline
https://nf-co.re/nascent
MIT License
18
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Clean up Publishing
#176
edmundmiller
opened
4 days ago
0
Add HOMER uniqmap
#175
edmundmiller
closed
4 days ago
4
PINTS scatter gather
#174
edmundmiller
closed
2 weeks ago
2
chore: Fix config selectors
#173
edmundmiller
opened
1 month ago
1
groHMM fails with CHM13 occasionally
#172
edmundmiller
opened
1 month ago
0
Clean up MultiQC and tests
#171
edmundmiller
closed
1 month ago
1
Fix "Access to undefined parameter `forwardStranded`" warnings
#170
edmundmiller
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.2
#169
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.1
#168
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.0
#167
nf-core-bot
closed
1 month ago
1
Bwamemory
#166
edmundmiller
closed
1 month ago
1
groHMM overhaul
#165
edmundmiller
closed
1 month ago
2
Consider tsshmm
#164
edmundmiller
opened
2 months ago
1
style: Make version snapshots pretty
#163
edmundmiller
closed
2 months ago
1
Fix GFFREAD bug
#162
edmundmiller
closed
2 months ago
1
test: Add expected behavior to fail with replicates that have the same name
#161
edmundmiller
opened
3 months ago
1
Sample IDs should work without underscores
#160
edmundmiller
opened
3 months ago
4
v.2.2.0 fails on multiple replicates of the same sample
#159
dmitrymyl
opened
3 months ago
6
Sample names must contain at least underscore (?)
#158
dmitrymyl
opened
3 months ago
1
Use official nf-test CI
#157
edmundmiller
closed
3 months ago
1
Cleanup output
#156
edmundmiller
closed
3 months ago
1
Use BAM_RSEQC subworkflow
#155
edmundmiller
closed
3 months ago
1
Update HOMER docs
#154
edmundmiller
closed
3 months ago
1
Support not pooling reads for HOMER
#153
edmundmiller
opened
3 months ago
0
Refactor tests
#152
edmundmiller
closed
3 months ago
1
Fix HOMER inputs
#151
edmundmiller
closed
4 months ago
1
Versions poc
#150
edmundmiller
closed
2 months ago
3
Add citations to MultiQC
#149
edmundmiller
closed
4 months ago
1
Flakey test
#148
edmundmiller
opened
4 months ago
0
Update Modules
#147
edmundmiller
closed
4 months ago
2
Important! Template update for nf-core/tools v2.14.1
#146
nf-core-bot
closed
4 months ago
1
Important! Template update for nf-core/tools v2.14.0
#145
nf-core-bot
closed
6 months ago
1
docs: Add info about the sample column concatinating groups
#144
edmundmiller
closed
3 months ago
2
Issue with concatenation of technical replicates
#143
bug1303
opened
6 months ago
0
Add STAR aligner
#142
edmundmiller
closed
4 months ago
1
build: Fix modules.json and bump subworkflows
#141
edmundmiller
closed
8 months ago
1
Add HISAT2
#140
edmundmiller
closed
8 months ago
1
Pass references as inputs
#139
edmundmiller
closed
8 months ago
1
Important! Template update for nf-core/tools v2.13.1
#138
nf-core-bot
closed
8 months ago
1
Use singularity containers for PINTS
#137
edmundmiller
closed
8 months ago
1
dev => master 2.2.0
#136
edmundmiller
closed
8 months ago
1
Important! Template update for nf-core/tools v2.13
#135
nf-core-bot
closed
9 months ago
0
2.2.0 Release Prep
#134
edmundmiller
closed
9 months ago
1
Fix gzip reference files
#133
edmundmiller
closed
9 months ago
1
Add Bowtie 2
#132
edmundmiller
closed
9 months ago
1
Fix CI memory requests
#131
edmundmiller
closed
9 months ago
1
Add AWS Megatest
#130
edmundmiller
closed
9 months ago
1
Important! Template update for nf-core/tools v2.12
#129
nf-core-bot
closed
9 months ago
1
Template update cleanup
#128
edmundmiller
closed
10 months ago
1
Consider Scatter Gather for processing speed
#127
edmundmiller
opened
10 months ago
0
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