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nf-core
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nascent
Nascent Transcription Processing Pipeline
https://nf-co.re/nascent
MIT License
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Fix GFFREAD bug
#162
edmundmiller
opened
1 week ago
1
test: Add expected behavior to fail with replicates that have the same name
#161
edmundmiller
opened
2 weeks ago
1
Sample IDs should work without underscores
#160
edmundmiller
opened
2 weeks ago
4
v.2.2.0 fails on multiple replicates of the same sample
#159
dmitrymyl
opened
3 weeks ago
6
Sample names must contain at least underscore (?)
#158
dmitrymyl
opened
3 weeks ago
1
Use official nf-test CI
#157
edmundmiller
closed
4 weeks ago
1
Cleanup output
#156
edmundmiller
closed
3 weeks ago
1
Use BAM_RSEQC subworkflow
#155
edmundmiller
closed
1 month ago
1
Update HOMER docs
#154
edmundmiller
closed
1 month ago
1
Support not pooling reads for HOMER
#153
edmundmiller
opened
1 month ago
0
Refactor tests
#152
edmundmiller
closed
1 month ago
1
Fix HOMER inputs
#151
edmundmiller
closed
1 month ago
1
Versions poc
#150
edmundmiller
opened
1 month ago
2
Add citations to MultiQC
#149
edmundmiller
closed
1 month ago
1
Flakey test
#148
edmundmiller
opened
1 month ago
0
Update Modules
#147
edmundmiller
closed
1 month ago
2
Important! Template update for nf-core/tools v2.14.1
#146
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v2.14.0
#145
nf-core-bot
closed
3 months ago
1
docs: Add info about the sample column concatinating groups
#144
edmundmiller
closed
1 month ago
2
Issue with concatenation of technical replicates
#143
bug1303
opened
4 months ago
0
Add STAR aligner
#142
edmundmiller
closed
1 month ago
1
build: Fix modules.json and bump subworkflows
#141
edmundmiller
closed
5 months ago
1
Add HISAT2
#140
edmundmiller
closed
5 months ago
1
Pass references as inputs
#139
edmundmiller
closed
5 months ago
1
Important! Template update for nf-core/tools v2.13.1
#138
nf-core-bot
closed
6 months ago
1
Use singularity containers for PINTS
#137
edmundmiller
closed
6 months ago
1
dev => master 2.2.0
#136
edmundmiller
closed
6 months ago
1
Important! Template update for nf-core/tools v2.13
#135
nf-core-bot
closed
6 months ago
0
2.2.0 Release Prep
#134
edmundmiller
closed
6 months ago
1
Fix gzip reference files
#133
edmundmiller
closed
6 months ago
1
Add Bowtie 2
#132
edmundmiller
closed
6 months ago
1
Fix CI memory requests
#131
edmundmiller
closed
6 months ago
1
Add AWS Megatest
#130
edmundmiller
closed
6 months ago
1
Important! Template update for nf-core/tools v2.12
#129
nf-core-bot
closed
6 months ago
1
Template update cleanup
#128
edmundmiller
closed
7 months ago
1
Consider Scatter Gather for processing speed
#127
edmundmiller
opened
7 months ago
0
Important! Template update for nf-core/tools v2.11.1
#126
nf-core-bot
closed
7 months ago
1
Important! Template update for nf-core/tools v2.11
#125
nf-core-bot
closed
8 months ago
1
Saving BWA MEM log
#124
Caffeinated-Code
opened
10 months ago
0
Discrepancy between bigwigs generated by bedtools and deeptools
#123
Caffeinated-Code
opened
10 months ago
0
Scatter ci
#122
edmundmiller
closed
1 month ago
2
Test results say chr22 when the ref is chr21?
#121
edmundmiller
opened
11 months ago
0
Important! Template update for nf-core/tools v2.10
#120
nf-core-bot
closed
11 months ago
1
Issues of creating BWA index with custom fasta and GTF
#119
YoshikiHigashijima
closed
6 months ago
0
Which assay type (GRO-seq, PRO-seq ... etc) should I use for EU-seq?
#118
YoshikiHigashijima
closed
6 months ago
1
Use fromSamplesheet
#117
edmundmiller
closed
1 year ago
1
Important! Template update for nf-core/tools v2.9
#116
nf-core-bot
closed
1 year ago
1
Flipped bigwig strands in PROseq samples
#115
Caffeinated-Code
opened
1 year ago
2
Add in nf-validation for samplesheet
#114
edmundmiller
opened
1 year ago
2
"ERROR ~ fromIndex = -1" during samtools sort step
#113
andreagillespie
closed
1 year ago
6
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