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nf-core
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nascent
Nascent Transcription Processing Pipeline
https://nf-co.re/nascent
MIT License
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Template update cleanup
#128
edmundmiller
closed
10 months ago
1
Consider Scatter Gather for processing speed
#127
edmundmiller
opened
10 months ago
0
Important! Template update for nf-core/tools v2.11.1
#126
nf-core-bot
closed
10 months ago
1
Important! Template update for nf-core/tools v2.11
#125
nf-core-bot
closed
11 months ago
1
Saving BWA MEM log
#124
Caffeinated-Code
opened
1 year ago
0
Discrepancy between bigwigs generated by bedtools and deeptools
#123
Caffeinated-Code
opened
1 year ago
0
Scatter ci
#122
edmundmiller
closed
4 months ago
2
Test results say chr22 when the ref is chr21?
#121
edmundmiller
opened
1 year ago
0
Important! Template update for nf-core/tools v2.10
#120
nf-core-bot
closed
1 year ago
1
Issues of creating BWA index with custom fasta and GTF
#119
YoshikiHigashijima
closed
9 months ago
0
Which assay type (GRO-seq, PRO-seq ... etc) should I use for EU-seq?
#118
YoshikiHigashijima
closed
8 months ago
1
Use fromSamplesheet
#117
edmundmiller
closed
1 year ago
1
Important! Template update for nf-core/tools v2.9
#116
nf-core-bot
closed
1 year ago
1
Flipped bigwig strands in PROseq samples
#115
Caffeinated-Code
opened
1 year ago
2
Add in nf-validation for samplesheet
#114
edmundmiller
opened
1 year ago
2
"ERROR ~ fromIndex = -1" during samtools sort step
#113
andreagillespie
closed
1 year ago
6
Important! Template update for nf-core/tools v2.8
#112
nf-core-bot
closed
1 year ago
0
refactor(#107): Clean up Multiqc mix
#111
edmundmiller
closed
1 year ago
1
Dev -> Master for 2.1.1 release
#110
edmundmiller
closed
1 year ago
1
Fix index lacking a meta map causing igenomes and premade indexes to fail
#109
edmundmiller
closed
1 year ago
1
test_full profile is broken
#108
maxulysse
closed
8 months ago
0
Clean up Multiqc channels
#107
edmundmiller
closed
1 year ago
0
Error executing process > 'NFCORE_NASCENT:NASCENT:ALIGN_BWA:BWA_MEM (1)'
#106
MathewBerg9
closed
1 year ago
0
BEDTOOLS_INTERSECT_FILTER is not invoked before accessing the output attribute in release version
#105
jianhong
closed
1 year ago
3
Dev -> Master for 2.1.0 release
#104
edmundmiller
closed
1 year ago
3
Release prep
#103
edmundmiller
closed
1 year ago
1
Bedtools sort output isn't deterministic
#102
edmundmiller
opened
1 year ago
0
nf-test
#101
edmundmiller
closed
1 year ago
1
Docs cleanup
#100
edmundmiller
closed
1 year ago
2
Important! Template update for nf-core/tools v2.7.2
#99
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.1
#98
nf-core-bot
closed
1 year ago
1
Missing homer outputs
#97
edmundmiller
closed
1 year ago
1
Obligatory metro map
#96
edmundmiller
opened
2 years ago
8
Improve reporting when no transcripts are found
#95
edmundmiller
opened
2 years ago
0
Filter and intersect
#94
edmundmiller
closed
2 years ago
1
Example of 3D genome integration
#93
edmundmiller
opened
2 years ago
0
motif production for region
#92
edmundmiller
opened
2 years ago
0
Example of integration with ATAC-seq pipeline output
#91
edmundmiller
opened
2 years ago
0
Support STAR
#90
edmundmiller
opened
2 years ago
0
Clean up published files
#89
edmundmiller
opened
2 years ago
0
Add plotHeatmap by Gene and by Transcript
#88
edmundmiller
opened
2 years ago
0
Fixed DOI with correct URL
#87
apeltzer
closed
2 years ago
3
Post release chores
#86
edmundmiller
closed
2 years ago
0
Refactor ext.when
#85
edmundmiller
opened
2 years ago
0
Migrate CI tests to pytest-workflow
#84
edmundmiller
opened
2 years ago
0
dev -> Master for 2.0.0 release
#83
edmundmiller
closed
2 years ago
2
Release prep
#82
edmundmiller
closed
2 years ago
2
Cleanup style
#81
edmundmiller
closed
2 years ago
1
Docs
#80
edmundmiller
closed
2 years ago
1
fix(featurecounts): Update multiqc config to include featurecounts
#79
edmundmiller
closed
2 years ago
4
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