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nf-core
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nascent
Nascent Transcription Processing Pipeline
https://nf-co.re/nascent
MIT License
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"ERROR ~ fromIndex = -1" during samtools sort step
#113
andreagillespie
closed
1 year ago
6
Important! Template update for nf-core/tools v2.8
#112
nf-core-bot
closed
1 year ago
0
refactor(#107): Clean up Multiqc mix
#111
edmundmiller
closed
1 year ago
1
Dev -> Master for 2.1.1 release
#110
edmundmiller
closed
1 year ago
1
Fix index lacking a meta map causing igenomes and premade indexes to fail
#109
edmundmiller
closed
1 year ago
1
test_full profile is broken
#108
maxulysse
closed
6 months ago
0
Clean up Multiqc channels
#107
edmundmiller
closed
1 year ago
0
Error executing process > 'NFCORE_NASCENT:NASCENT:ALIGN_BWA:BWA_MEM (1)'
#106
MathewBerg9
closed
1 year ago
0
BEDTOOLS_INTERSECT_FILTER is not invoked before accessing the output attribute in release version
#105
jianhong
closed
1 year ago
3
Dev -> Master for 2.1.0 release
#104
edmundmiller
closed
1 year ago
3
Release prep
#103
edmundmiller
closed
1 year ago
1
Bedtools sort output isn't deterministic
#102
edmundmiller
opened
1 year ago
0
nf-test
#101
edmundmiller
closed
1 year ago
1
Docs cleanup
#100
edmundmiller
closed
1 year ago
2
Important! Template update for nf-core/tools v2.7.2
#99
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.1
#98
nf-core-bot
closed
1 year ago
1
Missing homer outputs
#97
edmundmiller
closed
1 year ago
1
Obligatory metro map
#96
edmundmiller
opened
1 year ago
8
Improve reporting when no transcripts are found
#95
edmundmiller
opened
1 year ago
0
Filter and intersect
#94
edmundmiller
closed
1 year ago
1
Example of 3D genome integration
#93
edmundmiller
opened
1 year ago
0
motif production for region
#92
edmundmiller
opened
1 year ago
0
Example of integration with ATAC-seq pipeline output
#91
edmundmiller
opened
1 year ago
0
Support STAR
#90
edmundmiller
opened
1 year ago
0
Clean up published files
#89
edmundmiller
opened
1 year ago
0
Add plotHeatmap by Gene and by Transcript
#88
edmundmiller
opened
1 year ago
0
Fixed DOI with correct URL
#87
apeltzer
closed
1 year ago
3
Post release chores
#86
edmundmiller
closed
1 year ago
0
Refactor ext.when
#85
edmundmiller
opened
1 year ago
0
Migrate CI tests to pytest-workflow
#84
edmundmiller
opened
1 year ago
0
dev -> Master for 2.0.0 release
#83
edmundmiller
closed
1 year ago
2
Release prep
#82
edmundmiller
closed
1 year ago
2
Cleanup style
#81
edmundmiller
closed
1 year ago
1
Docs
#80
edmundmiller
closed
1 year ago
1
fix(featurecounts): Update multiqc config to include featurecounts
#79
edmundmiller
closed
1 year ago
4
Set up AWS Full tests
#78
edmundmiller
opened
1 year ago
0
Add dedup
#77
edmundmiller
closed
1 year ago
1
Adapter trimming
#76
edmundmiller
closed
1 year ago
1
nf-core subworkflows install
#75
edmundmiller
closed
1 year ago
2
Important! Template update for nf-core/tools v2.6
#74
nf-core-bot
closed
1 year ago
1
Include Homer annotate peaks from chip-seq
#73
edmundmiller
opened
1 year ago
0
Add PINTS Visualizer
#72
edmundmiller
opened
1 year ago
0
Investigate adapter trimming
#71
edmundmiller
closed
1 year ago
2
Pass CI
#70
edmundmiller
closed
1 year ago
1
Update Introduction (Pipeline Summary)
#69
sruthipsuresh
closed
1 year ago
1
Create Subway pipeline
#68
edmundmiller
opened
1 year ago
0
Optimize grohmm parameter tuning and transcript calling
#67
edmundmiller
opened
1 year ago
2
Add full test dataset
#66
edmundmiller
closed
1 year ago
1
Grohmm tuning
#65
edmundmiller
closed
1 year ago
1
Add CHM13 igenomes reference
#64
edmundmiller
closed
1 year ago
7
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