-
I was looking at the “unknowns” and thought it was odd to see these 'unknown' genes annotated to
“regulation of cell size”
100.00% 48.00 YCR061W, YBR093C, YGR111W
I don't think we should ann…
-
In order to facilitate investigations of gene function within a gene expression dataset, we want to be able to implement a Gene Ontology menu that is capable of highlighting and/or filtering the preex…
-
- Link to publication: https://www.biorxiv.org/content/10.1101/2021.06.04.447088v1
- Title of publication: Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression…
-
I think you should try to account for gene characteristics. For example, longer genes might be expected to harbor more SNPs. These genes might also be the ones harboring more motifs for post-transcrip…
-
Hello,
Following up on #3493 - 'GO:0043254 regulation of protein-containing complex assembly' seems odd. Real examples of *regulation* of protein-containing complex assembly should be rare (I cann…
-
So far, all the vignettes have been focused on cluster-scale analysis, but all can we use ArchR to investigate the regulation mechanism for one gene. For instance, I want to subset the result of getFe…
-
Dear authors
I recently came across the publication "Epigenetic regulation during cancer transitions across 11 tumor types" and was impressed by the massive scale analysis you have performed.
I…
-
Annotations to anatomy term P6.p are problematic because when computed on, one cannot arrive at it's vulval or non-vulval nature; Annotations need to be changed to either 'P6.p hermaphrodite' or 'P6.p…
-
To be used for GOC 2017 Conference June 1-5. Prepare to work on creating a SOP guided tour with a concrete example of having at least one ontology type of each connected to a gene. and if you can add…
-
Per Lisa Matthews:
Reactome is changing the way we represent regulation of catalysts in Reactome. Instead of showing the catalyst as the regulatedEntity in a regulation instances, we will be assignin…