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Hi,
Just wondering how difficult it would be to create tags for other species. I am currently using Repseqio to create libraries for MiXCR but want to do a comparison of analysis. Is there a pipeli…
tprkp updated
7 months ago
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Hi,
Great method! I wanted to file a feature request. Would it be possible to have an option to use only protein coding genes for the analysis or, more generally, to use genes from a predefined set…
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- [x] Take in low threshold of program weights to remove prior to run
- [x] Add in capability to use top N genes
- [x] Rename columns to standardized set (see below)
- [ ] Reconfigure dashapp to lo…
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Hi There,
I'm trying to follow along this tutorial with my own data (http://iqtree.org/doc/recipes/concordance-vector)
I'm currently using the latest release (IQ-TREE multicore version 2.3.6 for…
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Please allow export of differential expression results - the list of genes together with statistics (p-value, average and stdev in each group).
CC: @alokito
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As fellow Python user who does not want to switch to R too often I love the gseapy package. Recently, I discovered that it also offers a GSVA implementation. To see if this interpretation helps with w…
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I am trying to run this code for a mouse dataset (https://ccc-protocols.readthedocs.io/en/latest/notebooks/ccc_R/QuickStart.html):
```
# Generate list with ligand-receptors pairs in DB
lr_pairs %…
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gene sets flow upward as they are found to be enriched
like if the algorithm had slowed down A LOT
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Also requested here https://github.com/MaayanLab/blitzgsea/issues/7
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> Is there any chance that you can implement DGSEA in python as part of your package?
> https://academic.oup.com/bioinformati…
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There are no parameter settings in runGSEA that would allow the user to perform gene set specific enrichment
What should I do if I want to enrich for a specified set of genes?
Thank you very much fo…