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Hello,
I'm currently analyzing a substantial dataset comprising 11,743 genomes of different _Enterococcus_ species, including over 20 outgroup genomes from the same family and order. because of the…
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### Landscape Genetics CURE, part of BCEENET
The code is available to the public
ABSTRACT:
_Fill in Abstract Here_
HOW CODE WORKS AND HANDLE DATA:
_Fill in details here_
* **List o…
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## Description
The current landscape of SARS-CoV-2 Omicron/BA.2 is such that genetic diversity is very, very low. Accordingly, it would be desirable for MicrobeTrace to gracefully "identify" clusters…
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- during transitions between ecosystem states populations undergo drastic changes
- how does this impact evolutionary dynamics?
- if foundation species are drivers of ecological dynamics and evolution…
MKLau updated
10 years ago
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Hi,
I was wondering how are the confidence intervals calculated for pairwise LD calculation using r^2?
My LD calculation corresponds very well with patterns of genetic diversity and recombinatio…
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Something useful for teaching might be to have the R scripts available for people to download from the website by replacing "html" with "R". This is easily achieved with the command `knitr::purl('$
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Hello,
I am trying to use DiCE for truly model-independent counterfactual generation. But I am unable to create my own model interface.
Could you add a tutorial or give a short description how to do…
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Hi, I'm wondering if one can use gnomad instead of 1k-genomes for the ancestry estimate. somalier files for thousand genomes are restricted to only 5 superpopulations whereas gnomad has a higher diver…
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We want to use Biohansel pipeline in IRIDA for Campy and more species. Is it possible to include schema for Campy?
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Three pipelines GenEpi+DTK
1. Layered modular (CoTransmission): Scenario and Scientific Question (What's the isolated contribution of stochastic genotype seed replicates to the variance in genetic fea…