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Hi,
I see how to filter a gene list for most snv/indels in issue Filter a gene list #1964.
However, I want to look at intergenic variants as well. Annovar includes other info in the Gene.refGene…
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For example, when "South America" is selected, it is clear that a numerical value is expected, but "South America = 0.00" is nonsensical unless you know the context/meaning of that label, which isn't …
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(Maybe clarify this technical point somewhere else. It seems out-of-place here.)
HOME [tab] > Explore genomic data through the Viewer [heading] > View genome [button] > Ref. Seq. [channel] > i [butto…
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How to reproduce:
Search by -> Gene Symbol (CHMP7) -> genome browser fails to load
![Screen Shot 2022-07-25 at 9 48 08 AM](https://user-images.githubusercontent.com/8336575/180832850-e8d98c9c…
byee4 updated
2 years ago
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Clicking 'Open BAM File' within the genome browser displays the dialog "Still collecting alignment file URLs, try again soon".
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Cercis/canadensis/genomes/ISC453364.gnm3.GWXB
- Cercis/canadensis/annotations/IS…
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The rowRanges of the SingleCellExperiment output by scUTRquant seems to not capture the 3'UTRs of the transcripts. For example, the 3'UTR length of the ENST00000621592.8 transcript is 1993 according t…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Glycine/max/annotations/Lee.gnm3.ann1.ZYY3
…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Chamaecrista/fasciculata/genomes/ISC494698.gnm1.8Q19
- Chamaecrista/fasciculata…
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"Genome Browser" - This field is only relevant in CMG / Xenium applications.
Options:
After merging bioloop commit to remove genome_browser into Xenium, apply a reverse commit to bring back the ge…