compbio-UofT medsavant issues

compbio-UofT / medsavant

MedSavant is a search engine for genetic variants

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issues

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Move init script to a systemd service for the RPM and .deb distributions

#353 meatcar opened 9 years ago
0
Add GRCh38

#352 mfiume opened 9 years ago
1
Switch to GRCh nomenclature

#351 mfiume opened 9 years ago
1
Update 1000 genomes dataset ID to its new value

#350 cassiedoll opened 9 years ago
0
Add "include ref calls" option to the project wizard.

#349 meatcar closed 9 years ago
0
MedSavant Server permissions error on CentOS, Possibly redhat

#348 jvlasblom closed 8 years ago
0
Guest users should be allowed to add comments, instead they receive an ugly message

#347 mfiume closed 9 years ago
0
App "update" button removes apps

#346 ronammar opened 9 years ago
0
Selecting Charts in Variant Navigator doesn't show a chart

#345 meatcar opened 9 years ago
0
VCF Upload progress bar doesn't show progress of single file.

#344 meatcar closed 9 years ago
1
Enable the use of a proxy to download resources

#343 meatcar closed 9 years ago
2
can't select reference when uploading VCF

#342 jvlasblom opened 9 years ago
0
Jannovar error thrown when annotating VCFs

#341 meatcar closed 9 years ago
0
Database cannot be run on a separate machine from server

#340 meatcar opened 10 years ago
1
Deleting database in the Server Management page removes server from list.

#339 meatcar opened 10 years ago
0
Update phenotype to gene mapping, and recode to accept new format

#338 mfiume opened 10 years ago
0
Patient fields should not be editable by non-admins

#337 mfiume closed 9 years ago
2
Canceling image selection dialog throws error

#336 meatcar closed 10 years ago
0
jannovar should be updated

#335 jvlasblom opened 10 years ago
2
Regular users cannot upload variants via VCF Upload app

#334 jvlasblom opened 10 years ago
1
In Mendel, Type is NULL in variant inspector

#333 mfiume opened 10 years ago
0
Unlocking the Project does not work

#332 mfiume closed 10 years ago
1
Basic variant information is cutoff if there is no gene

#331 jvlasblom opened 10 years ago
1
App switching does not work on Linux or Windows

#330 mfiume opened 10 years ago
0
Improve field names for default annotations

#329 mfiume opened 10 years ago
0
Test installers on all platforms

#328 mfiume opened 10 years ago
1
Test App switching on Linux and Windows

#327 mfiume opened 10 years ago
0
Patient Directory > Variant Navigator communication doesn't add PillView

#326 mfiume opened 10 years ago
0
Signing in page doesn't show if a previous sign in was cancelled

#325 mfiume closed 10 years ago
2
Login using wrong password sometimes

#324 mfiume closed 10 years ago
2
MedSavant login passwords change without being changed

#323 ronammar opened 10 years ago
0
Server Management dialog reports invalid hostname for valid hostnames

#322 jvlasblom opened 10 years ago
0
MedSavant hangs when it can't access genomesavant.com

#321 ronammar opened 10 years ago
7
Workaround needed for doing chmod in the server on Windows

#320 mfiume opened 10 years ago
1
I get this error when trying to create a new DB

#319 ronammar closed 10 years ago
2
Login screen is buggy

#318 ronammar opened 10 years ago
5
COSMIC and SIFT comment fields should not be filterable

#317 mfiume closed 10 years ago
1
When a new user is created, the server can phone home the user's email address using the AnalyticsAgent

#316 mfiume opened 10 years ago
0
Require usernames to be email addresses

#315 mfiume opened 10 years ago
0
App icons take a long time to show after logging in.

#314 jvlasblom closed 10 years ago
2
ArrayIndexOutOfBounds if no cohorts defined

#313 jvlasblom closed 10 years ago
3
Checkbox background issues on Windows

#312 jvlasblom closed 10 years ago
1
Nullpointer exception in variant navigator on windows

#311 jvlasblom closed 10 years ago
1
Nullpointer exception when launching MedSavant on Windows 7

#310 jvlasblom closed 10 years ago
0
Removed mention of log4j.appender.EMAIL in log4j.properties in MedSavantServerEngine

#309 ruthgrace closed 10 years ago
1
Compress VCFs on client side before uploading

#308 ronammar opened 10 years ago
0
MySQL connection can timeout.

#307 jvlasblom opened 10 years ago
2
Upload new VCFs while the DB is locked

#306 ronammar opened 10 years ago
1
jannovar serialized file need to be updated

#305 ronammar opened 10 years ago
0
jannovar annotations may exceed storage limit

#304 ronammar opened 10 years ago
0