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compbio-UofT
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medsavant
MedSavant is a search engine for genetic variants
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project creation wizard does not accept enter as synonymous with continue
#303
jvlasblom
opened
10 years ago
0
Move all apps to Maven
#302
jvlasblom
opened
10 years ago
0
Multiple VCFs with the same DNA ID
#301
ronammar
opened
10 years ago
8
When adding a variant file, don't dump/reload existing variants.
#300
jvlasblom
closed
10 years ago
0
Uninstall old MedSavant upon installation of new MedSavant
#299
ronammar
opened
10 years ago
1
Update fields when splitting multi-allelic variants
#298
jvlasblom
opened
10 years ago
1
Use a different directory for SNAPSHOT plugins vs. released plugins
#297
mfiume
opened
10 years ago
0
Signout (implemented as a restart) does not preserve app name or icon
#296
mfiume
opened
10 years ago
0
medsavant website a bit ugly on windows
#295
jvlasblom
closed
10 years ago
2
Prompt to remove old versions of Apps
#294
jvlasblom
closed
10 years ago
1
Search Condition popup headings hard to read on windows
#293
jvlasblom
closed
10 years ago
1
Remove all temporary files created for import / annotation
#292
mfiume
opened
10 years ago
0
Character encoding in annotation databases
#291
ronammar
opened
10 years ago
0
annotation-formatter trims annotation lines
#290
jvlasblom
opened
10 years ago
0
Annotation sometimes fails with infobright error.
#289
jvlasblom
closed
10 years ago
0
Make VCF file import work with VCFs stored on the server
#288
jvlasblom
closed
10 years ago
0
Missing annotation values should be stored as nulls
#287
jvlasblom
closed
10 years ago
0
In annotation-formatter, warn if duplicate column names
#286
jvlasblom
opened
10 years ago
0
Annotation performance needs tweaking
#285
jvlasblom
closed
10 years ago
1
Too many open file handles
#284
jvlasblom
closed
10 years ago
1
Annotations not correctly matched to variants
#283
jvlasblom
closed
10 years ago
1
Restart doesn't work on windows
#282
mfiume
closed
10 years ago
0
Specify the genome that Jannovar uses
#281
mfiume
opened
10 years ago
0
some unsorted vcf files don't import
#280
jvlasblom
closed
10 years ago
4
Don't modify all project features at once
#279
mfiume
opened
10 years ago
1
Change "gender" to "sex"
#278
mfiume
opened
10 years ago
0
Zygosity should never be blank
#277
mfiume
opened
10 years ago
0
VCF files are still added to the vcf_file table when the import fails
#276
mfiume
closed
10 years ago
0
Edit patient gender and other attributes
#275
ronammar
opened
10 years ago
0
Projects cannot be unlocked
#274
jvlasblom
opened
10 years ago
1
Update BasicVariantColumns for new columns
#273
ronammar
opened
10 years ago
3
VCF files cannot be loaded on newly initialized server
#272
jvlasblom
closed
10 years ago
0
VCF files are not removed from filesystem when user removes VCF.
#271
jvlasblom
closed
10 years ago
0
Variant types are sometimes wrong
#270
jvlasblom
closed
10 years ago
0
ArrayIndexOutOfBounds in server log
#269
jvlasblom
closed
10 years ago
0
Change database column names
#268
jvlasblom
opened
10 years ago
0
Add method to replace variants in one step
#267
jvlasblom
closed
10 years ago
0
upload and import with one method
#266
jvlasblom
opened
10 years ago
0
Allow simultaneous uploads from phenome central
#265
jvlasblom
opened
10 years ago
0
ArrayIndexOutOfBounds when editing project
#264
jvlasblom
closed
10 years ago
1
Upload vcf.bz2 or vcf.gz instead of just vcf
#263
ronammar
closed
10 years ago
0
Move testing.html from src/main/resources to src/test/resources
#262
jvlasblom
opened
10 years ago
0
After autopublishing a null pointer exception is thrown
#261
jvlasblom
closed
10 years ago
0
Cut out wasted annotation steps
#260
mfiume
closed
10 years ago
2
Adding a patient throws an exception
#259
ronammar
opened
10 years ago
1
Revisit where Jannovar is called on server
#258
jvlasblom
closed
10 years ago
1
Global exception handler on server to prevent fatal crashes
#257
mfiume
closed
10 years ago
1
.vcf import takes a VERY long time
#256
jvlasblom
opened
10 years ago
11
Jannovar errors on vcf import
#255
jvlasblom
closed
10 years ago
3
Condition editor dialogs are not easily reused
#254
jvlasblom
closed
10 years ago
0
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